| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_4951 |
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| Symbol | |
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| ID | 4313842 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008391 |
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| Strand | - |
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| Start bp | 1966300 |
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| End bp | 1968273 |
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| Gene Length | 1974 bp |
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| Protein Length | 657 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 638152794 |
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| Product | squalene-hopene cyclase |
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| Protein accession | YP_776834 |
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| Protein GI | 115359696 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1657] Squalene cyclase |
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| TIGRFAM ID | [TIGR01507] squalene-hopene cyclase
[TIGR01787] squalene/oxidosqualene cyclases |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.736263 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0556288 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGATC TCACCGAAAT GGCTACCCTG TCCGCCGGCA CCGTGCCGGC CGGGCTCGAC
GCCGCCGTCG CCAGCGCGAC CGATGCGCTG CTGGCCGCAC AGAACGCGGA CGGCCACTGG
GTCTACGAAC TCGAGGCCGA CTCGACGATT CCCGCCGAAT ACGTGCTGCT CGTCCACTAT
CTCGGCGAGA CGCCTAACCT CGAGCTCGAA CAGAAGATCG GCCGCTATCT GCGCCGCGTC
CAGCAGGCCG ACGGCGGCTG GCCGCTGTTC ACCGATGGCG CGCCGAACAT CAGCGCGAGC
GTGAAGGCGT ATTTCGCGCT GAAGGTGATC GGCGACGACG AGAACGCCGA GCACATGCAG
CGCGCGCGCC GTGCGATCCA AGCGATGGGC GGCGCGGAGA TGTCGAACGT GTTCACGCGG
ATCCAGCTCG CGCTGTACGG TGCGATTCCG TGGCGCGCGG TGCCGATGAT GCCGGTCGAG
ATCATGCTGC TGCCGCAGTG GTTCCCGTTC CACCTGTCGA AGGTGTCGTA CTGGGCGCGT
ACCGTGATCG TGCCGCTGCT GGTGCTGAAC GCGAAGCGTC CGATCGCGAA GAACCCGCGC
GGCGTGCGCA TCGACGAGCT GTTCGTCGAC CCGCCCGTCA ACGCCGGGCT GCTGCCGCGT
CAGGGCCACC AGAGCCCCGG CTGGTTCGCG TTCTTCCGCG TGGTCGACCA TGCGCTGCGC
GCGGCCGACG GCCTGTTCCC GAACTACACG CGCGAACGCG CGATCCGTCA GGCCGTGTCG
TTCGTCGACG AGCGCCTGAA CGGCGAGGAC GGCCTCGGCG CGATTTATCC GGCGATGGCC
AACGCGGTGA TGATGTACGA CGTGCTCGGC TATGCGGAAG ATCATCCGAA CCGCGCGATC
GCGCGCAAGT CGATCGAGAA GCTGCTCGTC GTGCAGGAGG ACGAAGCGTA TTGCCAGCCG
TGCCTGTCGC CGGTGTGGGA CACGTCGCTC GCCGCGCATG CGCTGCTCGA GACCGGCGAC
GCGCGCGCCG AGGAGGCCGT GATCCGCGGC CTCGAATGGC TGCGCCCGCT GCAGATCCTC
GACGTGCGCG GCGACTGGAT CTCGCGCCGC CCGCACGTGC GACCCGGCGG CTGGGCGTTC
CAGTATGCGA ACCCGCACTA CCCGGACGTC GACGATACCG CGGTGGTCGC GGTGGCCATG
GATCGCGTGC AGAAACTCAA GCACAACGAC GCGTTTCGCG ATTCGATCGC GCGGGCGCGC
GAGTGGGTCG TCGGGATGCA GAGCAGCGAC GGCGGCTGGG GCGCGTTCGA ACCGGAAAAC
ACGCAGTACT ACCTGAACAA CATTCCGTTC TCGGATCACG GCGCGCTGCT CGATCCGCCG
ACGGCCGACG TGTCGGGCCG CTGCCTGTCG ATGCTGGCGC AGCTCGGCGA GACGCCGCTG
AACAGCGAGC CGGCGCGCCG CGCGCTCGAC TACATGCTGA AGGAGCAGGA GCCGGACGGC
AGCTGGTACG GCCGCTGGGG GATGAACTAC GTGTACGGCA CGTGGACGGC CCTGTGCGCG
TTGAACGCCG CGGGCCTGAC GCCGGACGAT CCGCGCGTGA AGCGCGGCGC GCAGTGGCTG
CTGTCGATCC AGAACAAGGA CGGCGGCTGG GGCGAGGATG GCGACAGCTA CAAACTGAAC
TATCGCGGCT TCGAGCAGGC GCCGAGCACC GCGTCGCAAA CGGCCTGGGC GCTGCTCGGC
CTGATGGCGG CCGGCGAGGT GAACAACCCG GCCGTCGCGC GCGGCGTCGA GTACCTGATC
GCCGAGCAGA AGGAACACGG GCTGTGGGAC GAGACGCGCT TCACGGCGAC GGGCTTCCCG
CGCGTGTTCT ACCTGCGCTA CCACGGCTAT CGCAAGTTCT TCCCGCTGTG GGCGCTCGCG
CGCTATCGCA ACCTGAAGCG CAACAACGCC ACGCGCGTGA CGTTCGGGCT GTAA
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| Protein sequence | MNDLTEMATL SAGTVPAGLD AAVASATDAL LAAQNADGHW VYELEADSTI PAEYVLLVHY
LGETPNLELE QKIGRYLRRV QQADGGWPLF TDGAPNISAS VKAYFALKVI GDDENAEHMQ
RARRAIQAMG GAEMSNVFTR IQLALYGAIP WRAVPMMPVE IMLLPQWFPF HLSKVSYWAR
TVIVPLLVLN AKRPIAKNPR GVRIDELFVD PPVNAGLLPR QGHQSPGWFA FFRVVDHALR
AADGLFPNYT RERAIRQAVS FVDERLNGED GLGAIYPAMA NAVMMYDVLG YAEDHPNRAI
ARKSIEKLLV VQEDEAYCQP CLSPVWDTSL AAHALLETGD ARAEEAVIRG LEWLRPLQIL
DVRGDWISRR PHVRPGGWAF QYANPHYPDV DDTAVVAVAM DRVQKLKHND AFRDSIARAR
EWVVGMQSSD GGWGAFEPEN TQYYLNNIPF SDHGALLDPP TADVSGRCLS MLAQLGETPL
NSEPARRALD YMLKEQEPDG SWYGRWGMNY VYGTWTALCA LNAAGLTPDD PRVKRGAQWL
LSIQNKDGGW GEDGDSYKLN YRGFEQAPST ASQTAWALLG LMAAGEVNNP AVARGVEYLI
AEQKEHGLWD ETRFTATGFP RVFYLRYHGY RKFFPLWALA RYRNLKRNNA TRVTFGL
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