| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_4938 |
|---|
| Symbol | |
|---|
| ID | 4313829 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008391 |
|---|
| Strand | + |
|---|
| Start bp | 1950107 |
|---|
| End bp | 1951606 |
|---|
| Gene Length | 1500 bp |
|---|
| Protein Length | 499 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 638152781 |
|---|
| Product | glycolate oxidase subunit GlcD |
|---|
| Protein accession | YP_776821 |
|---|
| Protein GI | 115359683 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0277] FAD/FMN-containing dehydrogenases |
|---|
| TIGRFAM ID | [TIGR00387] glycolate oxidase, subunit GlcD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.408162 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0595953 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTTTCA TCTACGACGA ACGGATCGAC GGCCCGCTGG CGACTGTCGA CCGCGACACG
CTCGTCGCCG CGCTCGCTGC GGCGGCGCCC GGCCTCGACG TGCTGCACGA GCGCGAGGCA
CTGAAGCCGT TCGAATGCGA TGGCCTCGCC GCGTACCGCA CGGTGCCGCT CGCGGTCGTG
CTGCCCGACA CGGTCGAGCA GGTGCGCGCG GTGCTGCGCG TCGCGGCCGC GCACGGCGTG
CCGGTCGTCG CGCGCGGCGC GGGCACCGGC CTGTCGGGCG GCGCGATGCC GCTCGAAAAA
GGCATCCTGC TCGTGATGGC GAAGTTCAAC CGGATTCTCG AAATCGACGC CGATGCCGGC
ATCGCGCGCG TGCAGCCCGG CGTGCGCAAC CTCGCGATCT CGCAGGCCGC CGCGCCCTAC
GACCTCTACT ACGCGCCGGA CCCGTCGTCG CAGATCGCCT GCTCGATCGG CGGCAACGTC
GCCGAAAACG CGGGCGGCGT GCACTGCCTG AAATACGGGC TGACGGTGCA CAACATCCTG
AAGGTCGAGA TCCTGACGAT CGACGGCGAC TTGCTGACGC TCGGCGCCGA CGCGCTCGAC
GCACCCGGCT TCGACCTGCT CGCGCTGTTC ACCGGCTCCG AAGGCATGCT CGGCATCGTC
ACCGAAGTGA CGGTGAAGCT GCTGCCGAAA CCGCCGAGCG TGAAGGTGCT GATGGCGAGC
TTCGACGACG TCGCCGAAGC CGGCGCGGCG GTCGCGCGGA TCATCGGCGC GGGCGTGATC
CCGGGCGGGC TCGAGATGAT GGACAACCTC GCGATCCGCG CGGCCGAGGA CTTCATCCAT
GCAGGCTATC CGGTCGATGC GCAGGCGATC CTGCTGTGCG AACTCGACGG CGCGGCGACC
GATGTCGAAG AAGACGCCGA ACGCGTCGCC GCGCTGCTGC GCGACGCCGG CGCGTCGGAG
ATCCGCGTCG CACGCGACGA GGCCGAGCGG CAGCGCTTCT GGGCCGGCCG CAAGAACGCG
TTTCCGGCGG TCGGCCGCAT GTCGCCCGAC TACTACTGCA TGGACGGCAC GATCCCGCGC
CGCGAGCTGC CGCGCGTGCT CGAAGGGATC GCGGCGTTGT CCGCGCAATA CGCGCTGCCG
GTCGCGAACG TGTTCCATGC GGGCGACGGC AACATGCATC CGCTGATCCT GTTCGACGCG
AATCGTCCCG GCGAACTCGA CCGCGCGGAA GCGCTCGGCG GCAAGATCCT CGAGCTGTGC
GTCGCGGTGG GCGGCAGCAT CACCGGCGAA CACGGCGTCG GGCGCGAGAA GATCAACCAG
ATGTGCGTGC AGTTCAACGC CGACGAAATC ACGTTCTTCC ACGCGGTGAA GGCCGCGTTC
GATCCGCGCC GCCTGCTCAA TCCCGGCAAG AACATCCCGA CGCTGCACCG TTGCGCCGAA
TTCGGCGCGA TGCACGTCCA TCACGGCAAG CTGCCGTTCC CCGACTTGGA GCGCTTCTGA
|
|---|
| Protein sequence | MSFIYDERID GPLATVDRDT LVAALAAAAP GLDVLHEREA LKPFECDGLA AYRTVPLAVV
LPDTVEQVRA VLRVAAAHGV PVVARGAGTG LSGGAMPLEK GILLVMAKFN RILEIDADAG
IARVQPGVRN LAISQAAAPY DLYYAPDPSS QIACSIGGNV AENAGGVHCL KYGLTVHNIL
KVEILTIDGD LLTLGADALD APGFDLLALF TGSEGMLGIV TEVTVKLLPK PPSVKVLMAS
FDDVAEAGAA VARIIGAGVI PGGLEMMDNL AIRAAEDFIH AGYPVDAQAI LLCELDGAAT
DVEEDAERVA ALLRDAGASE IRVARDEAER QRFWAGRKNA FPAVGRMSPD YYCMDGTIPR
RELPRVLEGI AALSAQYALP VANVFHAGDG NMHPLILFDA NRPGELDRAE ALGGKILELC
VAVGGSITGE HGVGREKINQ MCVQFNADEI TFFHAVKAAF DPRRLLNPGK NIPTLHRCAE
FGAMHVHHGK LPFPDLERF
|
|---|
| |