| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_4897 |
|---|
| Symbol | |
|---|
| ID | 4313788 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008391 |
|---|
| Strand | - |
|---|
| Start bp | 1899857 |
|---|
| End bp | 1900660 |
|---|
| Gene Length | 804 bp |
|---|
| Protein Length | 267 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 638152740 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_776780 |
|---|
| Protein GI | 115359642 |
|---|
| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
|---|
| TIGRFAM ID | [TIGR01096] lysine-arginine-ornithine-binding periplasmic protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.569673 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCGCA CTGCAAAGCT CGTCGTTTCC GTGCTGGCGT TCGCGCCGCT CGTCTCGTTC
GCGCAGGACA CGGCGATGAT CCGCTGGGGC ATCGATCCCA CCTATCCGCC GTTCGAGGCG
AAGCAGCCCG ACGGCTCGCT CGCCGGCTTC GACATCGACC TGCGCGATGC GATCTGCGAG
CAACTGCGCG CGAAGTGCGT GTGGGTTGAA CAGGGCTTCG ACGGGATGAT TCCGGCGCTG
CGCGCGCGCA AGTTCGACGT GATCATGTCC GCGATGACGG CCACCGACGA GCGGCTCAAG
CAGATCGACT TCTCGAACAA GCTGTACGCG TCGCCGGGCG CGCTCGTCGC GCCGGCCGGC
TCGAAGCTGC TGCCGACCGC GGCGTCGCTC GCCGGCAAGC GCGTCGGGAT CGATCAGGGC
ACCACGCAGG AGGCGTACGC GAAGGCCGAA TGGGCGACCA AGGGCGTGAC GATCGTGTCG
TACCAGAATC AGGACCAGGT GTATCAGGAT CTGGTGAACG GCCGTCTCGA CGCGACCTTC
CAGGACAAGA CGCAGGCCGG CTATTCGTTC CTGAAGACGC CGCGCGGCAA GGGCTACGCG
TTCGCAGGCC CCGACGTGAC CGACGTGCGC ATCACCGGCT ACGGCGTCGC GATGGGCGTG
CGCAAGGGCG ACGCCGACAT GAAGAAGCGG CTGAACGACG CGATCGCCGC GATCCGCGCG
AACGGCACGT ACCAGAAAAT CGCCGCGAAA TACTTCGACT TCGACATCTA CGGGGCGAAG
CAGCAGCTAA CCAGCGCGCC GTGA
|
|---|
| Protein sequence | MNRTAKLVVS VLAFAPLVSF AQDTAMIRWG IDPTYPPFEA KQPDGSLAGF DIDLRDAICE
QLRAKCVWVE QGFDGMIPAL RARKFDVIMS AMTATDERLK QIDFSNKLYA SPGALVAPAG
SKLLPTAASL AGKRVGIDQG TTQEAYAKAE WATKGVTIVS YQNQDQVYQD LVNGRLDATF
QDKTQAGYSF LKTPRGKGYA FAGPDVTDVR ITGYGVAMGV RKGDADMKKR LNDAIAAIRA
NGTYQKIAAK YFDFDIYGAK QQLTSAP
|
|---|
| |