| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_4894 |
|---|
| Symbol | |
|---|
| ID | 4313785 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008391 |
|---|
| Strand | + |
|---|
| Start bp | 1897557 |
|---|
| End bp | 1898099 |
|---|
| Gene Length | 543 bp |
|---|
| Protein Length | 180 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 638152737 |
|---|
| Product | XRE family transcriptional regulator |
|---|
| Protein accession | YP_776777 |
|---|
| Protein GI | 115359639 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1476] Predicted transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0489002 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGATTC GCCTGAAGCT GCTCAGAAAA CAGAAGGGCT GGACGCTCGA TGTGCTGGCC
GACGAGACCG GCCTGACCAA GAGCTACCTG TCGAAAGTCG AGCGCGGCCT GAGCGTGCCG
TCGATCGCGG TCGCGCTGAA GCTGTCGAAG GCGCTGAACA TCGACGTCGA GCAGCTGTTC
TCGGAAAGCC ACAACCGCGA GCTGATCACG GTCACGCGCG CCGGCGAGCG CACGGCGATG
GGTGCGGCGG CCAACAGCCA CGCGCACCGC TTCGAAAGCA TCGCGGCCGG CGTCGCGCCG
AAGAAGATGC TGCCGTTCGT CGTGCATCCG CCGCACGAAT TCGTCGCGTC GACGTTCCGC
GAGCACGAAG GCGAGGAATT CCTGTTCGTG CACAAGGGGC GCGTCGAAAT CGAATTCCCG
AACGAGACGG TGCAACTCAA GACCGGCGAT TCAGTCTATT TCAACGCACT CATCCCGCAC
CGCACGCGCA GCCTCGGCGC CGCGCAGGCG GAGATCCTGG TCATCGTCAG CCACGACGAC
TAG
|
|---|
| Protein sequence | MTIRLKLLRK QKGWTLDVLA DETGLTKSYL SKVERGLSVP SIAVALKLSK ALNIDVEQLF
SESHNRELIT VTRAGERTAM GAAANSHAHR FESIAAGVAP KKMLPFVVHP PHEFVASTFR
EHEGEEFLFV HKGRVEIEFP NETVQLKTGD SVYFNALIPH RTRSLGAAQA EILVIVSHDD
|
|---|
| |