Gene Bamb_4883 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_4883 
Symbol 
ID4313774 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008391 
Strand
Start bp1886306 
End bp1886926 
Gene Length621 bp 
Protein Length206 aa 
Translation table11 
GC content65% 
IMG OID638152726 
Producthemolysin III family channel protein 
Protein accessionYP_776766 
Protein GI115359628 
COG category[R] General function prediction only 
COG ID[COG1272] Predicted membrane protein, hemolysin III homolog 
TIGRFAM ID[TIGR01065] channel protein, hemolysin III family 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.0623487 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.221133 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCATGTCG GTGAGCGTTT CAACAGCATT TCCCATCTCG TCGGCGCGGT GTTGTCGGTG 
GCAGGGCTGG TCGCGCTGGT GACGATGGGC GCGCTCGATC GCGATCCCTA CAAGATCGTG
AGCTTCAGCG TGTACGGCGC GATGCTGATC CTGCTGTACG CGATCTCGAC GCTGTATCAC
AGCGTGCGCA ACCCGCGGCT CAAGGCGATC CTGCAGAAGT GCGACCATTC GGCCATTTAT
CTGCTGATCG CGGGCAGCTA CACGCCCTTC GCGCTCGTCA CGCTGCGCGG CCCGTGGGGC
TGGTCGCTGT TCGGCGTGAG CTGGGGGCTC GCCGCATTCG GGATCGCGCA GGAGCTCACG
CTCGGACGGC GCACGCGCAT CGTGTCGATG GTGCTGTACG TGCTGATGGG CTGGCTCGCG
CTCGTCGCGA TCCGCCCGCT GATCCATGCG TTGCCGCCCG TGGGGACTGC CTGGCTCGTG
GCCGGCGGCG TCATCTACAG CGCGGGCATC TACTTCTTCA TCAACGACGA GCGCATCCGC
CACGGGCACG GTATCTGGCA CCTGTTCGTG CTGGCCGGCA GCCTGTGCCA GTTCGTCAGT
GTCGCTATGT ACGTTGCGTG A
 
Protein sequence
MHVGERFNSI SHLVGAVLSV AGLVALVTMG ALDRDPYKIV SFSVYGAMLI LLYAISTLYH 
SVRNPRLKAI LQKCDHSAIY LLIAGSYTPF ALVTLRGPWG WSLFGVSWGL AAFGIAQELT
LGRRTRIVSM VLYVLMGWLA LVAIRPLIHA LPPVGTAWLV AGGVIYSAGI YFFINDERIR
HGHGIWHLFV LAGSLCQFVS VAMYVA