| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_4698 |
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| Symbol | |
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| ID | 4313590 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008391 |
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| Strand | - |
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| Start bp | 1684873 |
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| End bp | 1688088 |
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| Gene Length | 3216 bp |
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| Protein Length | 1071 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 638152542 |
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| Product | hydrophobe/amphiphile efflux-1 (HAE1) family protein |
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| Protein accession | YP_776582 |
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| Protein GI | 115359444 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.294616 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.444302 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATATTT CCAAATTTTT TATCGACCGG CCGATCTTTG CAGGAGTCCT ATCGGTGATC
ATCCTGCTCG GCGGGGTGAT CGCGATGTTC CTGCTGCCGA TTTCGGAGTA TCCGGAAGTC
GTGCCGCCTT CCGTGATCGT GAAGGCGCAA TACCCGGGCG CGAACCCGAA AGTGATCGCC
GAGACGGTCG CGTCGCCGCT TGAAGAGCAG ATCAACGGCG TCGAGGACAT GCTCTACATG
CAGTCGCAGG CAAACAGCGA CGGCAACATG ACGATCACCG TCACGTTCAA GCTCGGCACC
GATCCGGACA AGGCCACGCA GCTCGTGCAG AACCGCGTGA ACCAGGCGCT GCCGCGCCTG
CCGGAAGACG TGCAGCGGCT CGGCATCACC ACGGTGAAGA GCTCGCCGAC GCTGACGATG
GTGGTCCACC TGATCTCGCC GGACAACCGC TACGACATGA CCTACCTGCG CAACTACGCG
CTGATCAACG TGAAGGATCG CCTGTCGCGG ATCCAGGGCG TCGGCCAGGT GCAGCTGTGG
GGTTCGGGCG ACTACGCGAT GCGCGTGTGG CTCGATCCGC AGAAGGTCGC GCAGCGCGGG
CTGGCCGCCG AGGACGTCGT GCGGTCGATC CGCGAGCAGA ACGTGCAGGT CGCGGCCGGC
GTGATCGGCG CGTCGCCGTC GTTGCCGGGC ACGCCGCTGC AGCTGTCCGT GAACGCGCGC
GGCCGTCTGC AGACGGAAGA CGAGTTCGGC GACATCGTCG TGAAGACGAC GCCGGACGGC
GGCGTCACGC ATCTGCGCGA CATCGCGCGC ATCGAGCTCG ACGCGTCCGA GTACGGGCTG
CGCTCGCTGC TCGACAACAA GCCGGCCGTC GCGATGGCGA TCAACCAGTC GCCGGGCGCG
AACTCGCTGC AGATCTCCGA CGAAGTGCGC AAGACGATGG CCGAGCTGAA GCAGGACATG
CCGGCCGGTA TCGACTACAA GATCGTCTAT GACCCGACGC AGTTCGTGCG TTCGTCGATC
AAGGCCGTCG TGCATACGCT GCTCGAGGCG ATCGCGCTGG TCGTGATCGT CGTGATCGTG
TTCCTGCAGA CCTGGCGCGC GTCGCTGATT CCGCTGATCG CGGTGCCGGT GTCGATCATC
GGCACGTTCT CGCTGCTGCT CGGCTTCGGC TATTCGATCA ACGCGTTGTC GTTGTTCGGG
ATGGTGCTGG CGATCGGTAT CGTGGTCGAC GATGCGATCG TGGTGGTCGA GAACGTCGAG
CGCAACATCG AAAGCGGGAT GAACGCGCGG CAGGCGACCT ACAAGGCGAT GCAGGAAGTG
AGCGGGCCGA TCATCGCGAT CGCGCTGACG CTCGTCGCCG TGTTCGTGCC GCTCGCGTTC
ATGTCGGGCC TGACCGGCCA GTTCTACAAG CAGTTCGCGA TGACGATCGC GATCTCGACG
GTGATCTCGG CGTTCAACTC GCTGACGCTG TCGCCGGCGC TGTCCGCGAT CCTGCTGAAG
GGTCATGGCG ACAAGGAGGA CTGGCTCACG CGCGTGATGA ACCGCGTGCT CGGCGGTTTC
TTCAAGCGCT TCAACAAGGT GTTCCATCGC GGCGCGGAGA ACTACGGCCG CGGCGTGCGC
GGCGTGCTGT CGCGCAAGAC GCTGATGCTC GGCGTGTACC TCGTGCTGGT GGGCGCGACC
GTGCTGGTGT CGAAGATCGT GCCGGGCGGT TTCGTGCCCG CGCAGGACAA GGAATACCTG
ATCGCGTTCG CGCAGCTGCC GAACGGCGCG TCGCTCGACC GCACCGAGAA GGTGATCCGC
GACATGGGCT CGATCGCGTT GAAGCAGCCG GGCGTCGAGA GCGCGGTCGC GTTCCCGGGG
CTGTCGGTGA ACGGCTTCAC GAACAGCTCG AGCGCGGGCA TCGTGTTCGT CACGCTCAAG
CCGTTCTCGG AACGGCACGG CAAGGCGCTG TCGGCCGGCG CGATCGCGGG TGCGCTGAAC
CAGCAGTACG GGGCGATCAA GGACTCGTTC GTCGCGGTGT TCCCGCCGCC GCCGGTGCTT
GGCCTCGGCA CGCTCGGCGG GTTCAAGATG CAGATCGAGG ATCGTGGCGC AGTGGGCTAC
GCGAAGCTGT CGGACGCGAC CAACGACTTC ATCAAGCGCG CGCAGCAGGC GCCTGAACTG
GGCCCGTTGT TTACGAGCTA CCAGATCAAC GTGCCGCAGC TCAACGTCGA TCTCGACCGC
GTGAAGGCGA AGCAGCTCGG CGTGCCGGTC ACCGACGTGT TCAACACGAT GCAGGTGTAT
CTCGGCTCGC TGTACGTGAA CGACTTCAAC CGCTTCGGGC GCGTGTACCA GGTGCGCGTG
CAGGCCGATG CGCCGTTCCG CCAGCGCGCG GACGACATCC TGCAGCTGAA GACGCGCAAC
GACAAGGGTG AGATGGTGCC GCTGTCGTCG CTCGTCACGG TGACGCCGAC GTTCGGCCCG
GAAATGGTCG TGCGCTACAA CGGCTACACG GCGGCCGACA TCAACGGCGG CCCGGCGCCG
GGCTTCTCGT CGGGGCAGGC GCAGGCCGCG GTCGAGCGCA TCGCTCATGA AACGTTGCCG
CGCGGCGTGC GGTTCGAGTG GACCGACCTC ACGTACCAGC AGATCCTAGC GGGCGATTCG
GCGATGTGGG TGTTCCCGAT CAGCGTGCTG CTCGTGTTCC TGGTGCTCGC CGCGCTGTAT
GAAAGCCTGA CGCTGCCGCT CGCGGTGATC CTGATCGTGC CGATGAGCAT TCTGTCGGCA
CTCACGGGCG TGTGGCTCAC GCAGGGCGAC AACAACATCT TCACGCAGAT CGGCTTGATG
GTGCTGGTGG GGCTGTCGGC GAAGAACGCG ATCCTGATCG TCGAATTCGC GCGCGAACTG
GAGCATGACG GCAGGACGCC GCTCGAGGCC GCGATCGAGG CGAGCCGGCT GCGGCTGCGC
CCGATCCTGA TGACGTCGAT CGCATTCATC ATGGGCGTCG TGCCGCTCGT CACGTCGACG
GGTGCGGGCT CGGAGATGCG GCATGCGATG GGTATCGCGG TGTTCTTCGG GATGCTCGGC
GTGACGCTGT TCGGGCTGAT GCTGACGCCG GTGTTCTACG TGGTGCTGCG CACGCTCGCG
GGCGGCAAGA TCCACGTCGC CGGGAAGGAC TCCGCCGGCT ATGGCGCGTC GGGTTCGGGC
GTGCCGGCTA CCGGCGTGCC GGCTTCGGAT GCTTGA
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| Protein sequence | MNISKFFIDR PIFAGVLSVI ILLGGVIAMF LLPISEYPEV VPPSVIVKAQ YPGANPKVIA
ETVASPLEEQ INGVEDMLYM QSQANSDGNM TITVTFKLGT DPDKATQLVQ NRVNQALPRL
PEDVQRLGIT TVKSSPTLTM VVHLISPDNR YDMTYLRNYA LINVKDRLSR IQGVGQVQLW
GSGDYAMRVW LDPQKVAQRG LAAEDVVRSI REQNVQVAAG VIGASPSLPG TPLQLSVNAR
GRLQTEDEFG DIVVKTTPDG GVTHLRDIAR IELDASEYGL RSLLDNKPAV AMAINQSPGA
NSLQISDEVR KTMAELKQDM PAGIDYKIVY DPTQFVRSSI KAVVHTLLEA IALVVIVVIV
FLQTWRASLI PLIAVPVSII GTFSLLLGFG YSINALSLFG MVLAIGIVVD DAIVVVENVE
RNIESGMNAR QATYKAMQEV SGPIIAIALT LVAVFVPLAF MSGLTGQFYK QFAMTIAIST
VISAFNSLTL SPALSAILLK GHGDKEDWLT RVMNRVLGGF FKRFNKVFHR GAENYGRGVR
GVLSRKTLML GVYLVLVGAT VLVSKIVPGG FVPAQDKEYL IAFAQLPNGA SLDRTEKVIR
DMGSIALKQP GVESAVAFPG LSVNGFTNSS SAGIVFVTLK PFSERHGKAL SAGAIAGALN
QQYGAIKDSF VAVFPPPPVL GLGTLGGFKM QIEDRGAVGY AKLSDATNDF IKRAQQAPEL
GPLFTSYQIN VPQLNVDLDR VKAKQLGVPV TDVFNTMQVY LGSLYVNDFN RFGRVYQVRV
QADAPFRQRA DDILQLKTRN DKGEMVPLSS LVTVTPTFGP EMVVRYNGYT AADINGGPAP
GFSSGQAQAA VERIAHETLP RGVRFEWTDL TYQQILAGDS AMWVFPISVL LVFLVLAALY
ESLTLPLAVI LIVPMSILSA LTGVWLTQGD NNIFTQIGLM VLVGLSAKNA ILIVEFAREL
EHDGRTPLEA AIEASRLRLR PILMTSIAFI MGVVPLVTST GAGSEMRHAM GIAVFFGMLG
VTLFGLMLTP VFYVVLRTLA GGKIHVAGKD SAGYGASGSG VPATGVPASD A
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