Gene Bamb_4624 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_4624 
Symbol 
ID4313516 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008391 
Strand
Start bp1592316 
End bp1593368 
Gene Length1053 bp 
Protein Length350 aa 
Translation table11 
GC content71% 
IMG OID638152463 
Productinosine/uridine-preferring nucleoside hydrolase 
Protein accessionYP_776508 
Protein GI115359370 
COG category[F] Nucleotide transport and metabolism 
COG ID[COG1957] Inosine-uridine nucleoside N-ribohydrolase 
TIGRFAM ID[TIGR01409] Tat (twin-arginine translocation) pathway signal sequence 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.122838 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCCATC CGATCGCATC CCGCCGCACC TTCCTGAAAC TGTCCGCCGC GTTGGCCGGC 
ACCGCGCTGC TGCCCGAAAC GGGCGCGTTC GCGGCCGGCG GCGACGCCGC GCGGCGCACG
GTGATCATCG ATACCGACCC GGGGCAGGAC GACGCCATCG CGATCCTGTT CGCGCTCGGC
GCGCAGGACC GCCTCGACGT GCGCGCGCTG ACCGCCGTGG CCGGCAACGT GCCGCTCGAG
CTGACCGAAC GCAATGCGCG GATCATCCGC GACTGGGCCG GCCGCACGCA GACGCTGCCG
GTGTTCGCGG GTTGCCCGCG CCCGCTCGTG CGCGAGCTCG TGACGGCCGC GAACGTGCAC
GGCAAGACCG GCCTCGAAGG TGTCGCGCTG CACGAACCGC GCGCGCCGCT CGCGGCCGGG
CATGCGGTGT CTTACCTCGT CGATACGCTG AGCCGCGCGG CGCCGAACAG CGTGACGCTG
TGCGCGCTCG GCCCGCTGAC GAACATCGCG ACCGCGCTGG TCGAAGCGCC GCAGATTCGC
GGCGCGTTGC GCGAGATCGT GCTGATGGGC GGCGCGTTTT TCGAGCGCGG CAACATCACG
CCGGCCGCGG AGTTCAACAT CTACGTCGAT CCGCAGGCGG CCGAAATCGT ATTCGGCAGC
GGGGTGCCGA TCGTCGTGCT GCCGCGCGAC GTCGCGGTGA AGGCGCCGAT CACGCCGGCG
CGCGTCGCGC CGTTCCGTGC GCTCGGCAAC CGCTGCGGCG CGATCGTCGC GGACATCATG
GACGCCGAGC TCGCGTACAA CAGGAAGCGG CGCGGTGTCG ACGACGGGCC GATGTACGAC
CCGACGGCGG TCGGCTATCT CGTCGATCCG ACGCTGTTCA ACGGACGCAA GGTGAACGTC
GTCGTCGAGA CGACCGGGCA GTGGACGCTC GGCGAGACGG TGATCGACTG GAACGGGCGC
AGCGGCCGCG CGCCGAATGC GACGTGGATC AACGAGGTCG ACGCGGACCG CTTCTACGCG
ACGCTCGCCG AGCGCATCGC GAAGCTGCCC TGA
 
Protein sequence
MTHPIASRRT FLKLSAALAG TALLPETGAF AAGGDAARRT VIIDTDPGQD DAIAILFALG 
AQDRLDVRAL TAVAGNVPLE LTERNARIIR DWAGRTQTLP VFAGCPRPLV RELVTAANVH
GKTGLEGVAL HEPRAPLAAG HAVSYLVDTL SRAAPNSVTL CALGPLTNIA TALVEAPQIR
GALREIVLMG GAFFERGNIT PAAEFNIYVD PQAAEIVFGS GVPIVVLPRD VAVKAPITPA
RVAPFRALGN RCGAIVADIM DAELAYNRKR RGVDDGPMYD PTAVGYLVDP TLFNGRKVNV
VVETTGQWTL GETVIDWNGR SGRAPNATWI NEVDADRFYA TLAERIAKLP