| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_4568 |
|---|
| Symbol | |
|---|
| ID | 4313460 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008391 |
|---|
| Strand | + |
|---|
| Start bp | 1520164 |
|---|
| End bp | 1523583 |
|---|
| Gene Length | 3420 bp |
|---|
| Protein Length | 1139 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 638152407 |
|---|
| Product | membrane protein-like protein |
|---|
| Protein accession | YP_776452 |
|---|
| Protein GI | 115359314 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG5373] Predicted membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.95183 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATTGGG CCTTTGCCGC AATCGGCTTC ATCGCGGGCG GTATCGCCGC ATTATTCGGG
GATTTCTCGG TCGCCAACGG CTCGCTGCTG GGTGCGGTGG CCGGGTTCTG CATCGGCCAC
GCGCTGCGGC AACGCAAGCG CAACGGCGGC GACACGCCGC CCGGCGCGTT CGCGATGTCC
GCACCGCCTG CAACACCGCA ACCCCCACCC GTTCTGCTCG CCGATCGCGT CGCGCGCCTC
GAAGCGACGG TCGAGACGCT GACGCGCGAG CTCGATGTGC TGCGCGGCCA GCTCGCCGGC
GCGAAAGCCG GTGCTGCCGC GACCGGCACC GCCACGCACG CGCCGTCGGC CACGCCCGCC
ACCGTCCCGC CGCCTGCCCC GCTTCCGCCA CGGTCCGCCG TGCGGCCCGC CGCCGCGAGC
GCCGGCACGC CAGCGTCGAC GTCCATGCCG ACTCCCGCGC CGACGCCCGC ACCGACGCCC
GCACCGACTC CCGCACCGAC TCCCGCGCCG GCAGTCGCCG CGCGGACGAG CGACGCGCCG
GCCGCCGCCG CTGCACCGAC GAATGCACCC GCAGCCGCAG CCCGCCCGAT CCCGCCCGCG
CCACGCGAAC CCGGCATCGC CGACCGCGCA TTCCGCGCCG CGCGCGACTG GCTGCTCGGT
GGCAACACGG TCGTGCGCGT CGGCATCATC GTGCTGTTCT TCGGCGTCGC GTTCCTGCTC
AAGTACGCGG CCGACAACAG CATGCTGCCG ATCGAATTCC GTCTCGCCGG CACGGCGCTC
GCCGCGGCCG CGCTGCTCGC GATCGGCTGG CGCGTGCGTG CGCGCCGCGC CGCGTATGGC
CTCGTGCTGC AGGGCGGCGG CATCGGCATC CTGTACCTGA CGATCTTCGC CGCGACCAAG
CTCTACGCGC TGCTGCCGGT CGGCGCCGCG TTCCCGCTGA TGGTCGCGGT GTGCGCGCTG
AGCGCGTTCC TCGCGGTGAA GCAGAACGCG TTGCCGCTCG CGTTCATGGG CAGCGCGGGC
GGCTTTCTCG CGCCGGTGCT GCTGTCGACC GGCCAGGGTA ACCATGTCGC GCTGTTCAGT
TACTACGCAT TACTGAATGC GGGCATCTTC GCGATCGCGT GGTTCAAGGC CTGGCGTCCG
CTGAACCTGC TCGGCTTCGT GTTCACGTTC ACGATCGGCT CGGCGTGGGG CGTGACGGCC
TACCGCCCCG CGCTGTTCGC GAGCACCGAG CCGTTCCTGA TCCTGTTCTT CCTGATGTAT
GTCGGCATCG CGCTGCTGTA TGCGGTGAAG CGCGAACTGG CGTTGCGGCA CTACGTGGAC
GGCACGCTCG TGTTCGGCAC ACCGATCGTC GCGACCGCGC TGCAGGCGGC GCTCGTGAAG
GACATCCCGT TCGGGCTCGC GTGGAGCGCC GTCGCGCTGT CGGCCTTCTA CGTCGCGCTG
GCCGCGTGGC TCACGCGGCG CCGCGAGCGC CTCGCGCTGC TGTTCGAATC CACGCTCGCG
CTCGCGGTGA TCTTCGCGAC GCTCGCGGTG CCGCTCGCGT TCTCGGGCCC GACGACCAGC
GCCGCATGGG CGATCGAAGG CGCGGCCGTC GTCTGGCTCG GCGTGCGCGA GAAACGCCTG
CTGCGGTTCG GCTTCGGGCT GCTGATGCAG GTCGCCGCGG CCGGCGCATT CTTCACGAGC
CTGCTCGGGC CGGCCGACAC CACCGCGCTG CCCGTGCTCA ACGGCCCGAC CATCGCGATG
CTGCTGATCG CGCTCGCCGG CCTGTTCACC GGCTGGTGGC TGCACGGACG CGACGAAGCG
CGCGCGTGGC ATGCATGGAT GCCGGAGGTC GGCGCCGCGG CCGCGGCGTG GGGGCTGCTG
TGGTGGGTCG GCGGCGGGCT GCATGAAATC CTCGTCTACG CGAGCCGTCA CGTCGATCTG
CATGCCGACC GCTTCGTCGT CGACGCGACC GCGCTGTTCG CGGCCGGCAC CGCGTGGCTG
GCACACGTCG CGCGCCGCAA GCTCGCGTGG CCGATCGCAG AATGGCCGGC GCTCGCGCTG
ACGCCGGTGC TCGCGCTGCT CGCGTGGCGC GCGTTCGATT CGCACGAAGC GCCGCTGTCG
GGCATGGGCG CGTTCGCGTG GCCGATCGCC GTCATCGCGT GCTATGCGCT GCTGCTGCGA
CAGTCGCGGC GCACGACGGC CGCGGGGGCG ACGGACAGGT CGGCCGTGGG GGCGCTCCCC
GCCCCCGTGC TCGCACCGCT GCACACGCTG ATGTTCTGGA CGTTGTGCGG GCTGTTCTCG
CTCGAAGGCT TCTGGCGCCT GCGCGCGTTC GTACCCGAAG GCGCGTGGAG CTGGAGCGCG
TGGGCCTACG GCTTCGGCGC GCTGCTCCTG CTGGTGGCGG GCCCCGGCTC GCGGCTGCGC
TGGCCGGTTG CCGCGTTCCC GCGTGCGTAT CAGGTATGGG GTGCCGCGCC GCTCGCCGCG
CTGCTGGGGC TGTGGAGCAT CGCCAGCGTG ACGAGCGACG GCGACGCGTC GCCGCTGTTC
TGGCTGCCGC TGCTCAATCC GCTCGACGTC GCGCAACTGC TGATCTTCGT CGCGCTCGCC
ACCTGGCTGC GCCGCCTGAA GACGCTCGGC ATCACGTGGC ATCCGCTTGC GGCCGACCTC
GCGGCGCTCG CGACCGTGTT CCTGTGGTTC AACGCGCTGC TGCTGCGCAC GCTGCATCAC
CGTTTCCACC TGGCCTACGA CATCGATACC GTGCTGTCGT CGTTCGGCAT CCAGCAGGTG
TTCATGGTCG GCTGGAGCCT GTTCGCGTTC GCCGGCATGT GGCTCACGCG CCGTGACGGC
ATCGCGCGCG TATGCGCGCT CGCGTCGCTG CCGCTGATCG TCGTGATGTG GGTCTGGACC
TTCTATGCGA ACTTCACGCA GGATGGTGGC AGCTGGGCGC GCATCCCGCT GCTCAATCCG
CTCGATCTCG TGCTCGTGGT GGTCTATGCG CTCGCCGCGT CGTGGTTCGT GCGCGCGCGC
AAGCTCGGGT GGTCGTTCGA CAACTATCGC GTCGAACTGC TGAGCGGAGC GGGCGCGACC
GCGTTCCTCT GGCTGAACGC GATCCTGCTG CGCACCCTGC ATCACTGGGC CGGCGTGCCG
TACGAATTCG GCGCAATGGC CGAATCGACG CTCGTGCAGG CTTCGGTGTC CGTGTACTGG
ACGCTCTGCG CGCTCGCGAT CACGATCTGG GCCACGCGCC GCGGACTGCG TCCGCTGTGG
TTCGTCGGCG CCGCGCTGCT CGCGCTCACG GTGATCAAGC TGTTCCTGTT CGACCTGTCG
CACGTGACCG GCATCGAGCG CATCGTGTCG TTCATCGGCA TCGGCGTGCT GCTGCTGTTG
ATCGGCTATT TCTCGCCGCT GCCGCCGAAG GCCGCGCTCC AACCGGACGA CGCACGATGA
|
|---|
| Protein sequence | MNWAFAAIGF IAGGIAALFG DFSVANGSLL GAVAGFCIGH ALRQRKRNGG DTPPGAFAMS
APPATPQPPP VLLADRVARL EATVETLTRE LDVLRGQLAG AKAGAAATGT ATHAPSATPA
TVPPPAPLPP RSAVRPAAAS AGTPASTSMP TPAPTPAPTP APTPAPTPAP AVAARTSDAP
AAAAAPTNAP AAAARPIPPA PREPGIADRA FRAARDWLLG GNTVVRVGII VLFFGVAFLL
KYAADNSMLP IEFRLAGTAL AAAALLAIGW RVRARRAAYG LVLQGGGIGI LYLTIFAATK
LYALLPVGAA FPLMVAVCAL SAFLAVKQNA LPLAFMGSAG GFLAPVLLST GQGNHVALFS
YYALLNAGIF AIAWFKAWRP LNLLGFVFTF TIGSAWGVTA YRPALFASTE PFLILFFLMY
VGIALLYAVK RELALRHYVD GTLVFGTPIV ATALQAALVK DIPFGLAWSA VALSAFYVAL
AAWLTRRRER LALLFESTLA LAVIFATLAV PLAFSGPTTS AAWAIEGAAV VWLGVREKRL
LRFGFGLLMQ VAAAGAFFTS LLGPADTTAL PVLNGPTIAM LLIALAGLFT GWWLHGRDEA
RAWHAWMPEV GAAAAAWGLL WWVGGGLHEI LVYASRHVDL HADRFVVDAT ALFAAGTAWL
AHVARRKLAW PIAEWPALAL TPVLALLAWR AFDSHEAPLS GMGAFAWPIA VIACYALLLR
QSRRTTAAGA TDRSAVGALP APVLAPLHTL MFWTLCGLFS LEGFWRLRAF VPEGAWSWSA
WAYGFGALLL LVAGPGSRLR WPVAAFPRAY QVWGAAPLAA LLGLWSIASV TSDGDASPLF
WLPLLNPLDV AQLLIFVALA TWLRRLKTLG ITWHPLAADL AALATVFLWF NALLLRTLHH
RFHLAYDIDT VLSSFGIQQV FMVGWSLFAF AGMWLTRRDG IARVCALASL PLIVVMWVWT
FYANFTQDGG SWARIPLLNP LDLVLVVVYA LAASWFVRAR KLGWSFDNYR VELLSGAGAT
AFLWLNAILL RTLHHWAGVP YEFGAMAEST LVQASVSVYW TLCALAITIW ATRRGLRPLW
FVGAALLALT VIKLFLFDLS HVTGIERIVS FIGIGVLLLL IGYFSPLPPK AALQPDDAR
|
|---|
| |