| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_4535 |
|---|
| Symbol | |
|---|
| ID | 4313427 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008391 |
|---|
| Strand | + |
|---|
| Start bp | 1488016 |
|---|
| End bp | 1488936 |
|---|
| Gene Length | 921 bp |
|---|
| Protein Length | 306 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 638152374 |
|---|
| Product | substrate-binding region of ABC-type glycine betaine transport system |
|---|
| Protein accession | YP_776419 |
|---|
| Protein GI | 115359281 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1732] Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACTCG CCCTGCCCGC CCGGATCCTG GGCCTCGCAC TCGCCGCCGC CGTCGCGCCC
GGTGCGCGTG CCGACACGCC CGTCGTGGTG TCGTCGAAGA TCGATACCGA AGGCAACCTG
CTCGGCAACG TCATCGCGCA GGTGCTGAAG GCCCACGGCA TCCCCGTCAC CGAAAAGATC
GCACTCGGCA CGACGCCGAT CGTACGCAAG GCGCTGACCA GCGGCGAGAT CGACATCTAC
CCCGAATACA CGGGCAACGC CGCGTTCTTC TTCAACAAGG CCGACGATCC CGCGTGGAAG
AACGCAAGCC AGGGCTACGA CACCGCGAAG AAGCTCGACT ACGCGGCGAA CCATCTCGTC
TGGCTCACGC CGGCGCCCGC GAACAATACG TGGGGCGTCG CCGTGCTCGC GCCCGTCGCG
CAATCGCAGC ACCTGAAGAC CCTCTCCGAT TTCGGCAAGT GGACCGTGGG CGGCGGCAAG
GTGAAGCTTG CCGCGTCGGC CGAGTTCGTG AACAGCCCAT CCGCGCTGCC GTCGTTCGAG
AAGGCATACG GCTTCAAGCT GAAACCCGAC CAGCTCGTCG TGCTGTCCGG CGGCGACACC
GCCGCGACGA TCAAGGCCGC CGCAAACCAG ACCGACGGCG TGAACGCCGC GATGGTGTAC
GGCACCGATG GCGGCATCGC CTCGAGCGGC CTCGTCGTGC TCGACGACGA CAAGCACGTG
CAGCCCGTCT ATGCGCCGGC ACCCGTGATT CGCGAAGCCG CGCTGAAGGC GCATCCGCAG
ATCGCCGACT ACCTGAAGCC CGTGTTCTCG AGCCTCGACC TGAAGACGCT GCAAGCACTG
AATGCACGCA TCCAGATCAA TGGCGAACCG GCGGCCGGCG TGGCCAAGAG CTATCTGAAA
TCGAAGGGCT TCGTCAAGTG A
|
|---|
| Protein sequence | MKLALPARIL GLALAAAVAP GARADTPVVV SSKIDTEGNL LGNVIAQVLK AHGIPVTEKI
ALGTTPIVRK ALTSGEIDIY PEYTGNAAFF FNKADDPAWK NASQGYDTAK KLDYAANHLV
WLTPAPANNT WGVAVLAPVA QSQHLKTLSD FGKWTVGGGK VKLAASAEFV NSPSALPSFE
KAYGFKLKPD QLVVLSGGDT AATIKAAANQ TDGVNAAMVY GTDGGIASSG LVVLDDDKHV
QPVYAPAPVI REAALKAHPQ IADYLKPVFS SLDLKTLQAL NARIQINGEP AAGVAKSYLK
SKGFVK
|
|---|
| |