Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bamb_4482 |
Symbol | |
ID | 4313374 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria AMMD |
Kingdom | Bacteria |
Replicon accession | NC_008391 |
Strand | - |
Start bp | 1425899 |
End bp | 1427038 |
Gene Length | 1140 bp |
Protein Length | 379 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 638152321 |
Product | porin |
Protein accession | YP_776366 |
Protein GI | 115359228 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3203] Outer membrane protein (porin) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.46976 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGCAAA AGAAAGTTGC CGTAGCCGCT GCGCTTGCAT GCGCGGCCTG TATTCCCGCC ATCGGCCATG CACAGAGCAG CGTGACGCTG TACGGGATTC TCGACGCGGG CATCACCTAC GTGAACAACA CGGGCGGCTC GCACGTTGTC AAGTTCGACG ACGGCGTCGC ATACGGGAAC CGTTTCGGCC TGAAAGGCAC GGAAGATCTC GGCGGCGGCC TGAAGGCCGT GTTCGTGCTC GAGAGCGGTT TCCACCTCGG CAACGGGCAG CTCGGCTTCG GCGGGTCGGA GTTCGGTCGG CAGGCTTATG TCGGTCTGCA GAACGACTGG GGCACGCTGT CGTTCGGCAA CCAGCTCGAC ATCACCAACG AACTGGTATC GATCTACAAC ATCTCCGCGT GGGGCAGCGG CTATGCGATC CACCAGGGCG ACTTCGACCG CTTCAACGGC GACCGCCTGC CGAACTCGGT CAAATTCCTG TCGAACGACC TGAGCGGCTT CAAGTTCGGC GCGATGTACT CGTTCGGCAA CGTCGCCGGC AACTTCCACC GCAACAGCGC ATGGAGCGCG GGCGCGAGCT ACACGAAGGG CGACTTCTCG ATCGGCGCCG CGTACACGCG CCTGAACAAC CCGAACGGCA TCTACGCGTT CGACCCGTAC GCGATGATCG GCACGCATAC GTTCCTCGGC CAGCAGACCG TCACCGTCGA TCCGGCGACC GGCGCGCGCA CCGACCTGTT CGCGAATACC GCGATGGACG TCGACAGCCA GGGCACGTTC GGCGTCGGCA CGAGCTACAC GATCGGCAAG CTGACGCTCG ACGCGAACTA CTCGTACACG ACGATCAAGG GCTTCGGCCA GTCGTCGCAC ATGCAGGTGT ACGAAGGCGG CGGCCTGTAT CAGTTCACGC CGGCGCTGAG CTTCATCGCG GGCTACCAGC ACACGCGCTT CGAAGGCCAC CACTGGAACC AGGGCACGGC CGGCCTGCAC TACCTGCTGT CGAAGCGCAC CGACGTGTAC ATCTCCGGCG ATTACCTGCG CGCGTCGCAC GGTGTCGATG CGGTGGTCGG CTACAGCTTC ACGCCGTCGA CCACGCAGAC GCAGGCCGAC GTGCGGATCG GCATGCGGCA TTCTTTCTGA
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Protein sequence | MKQKKVAVAA ALACAACIPA IGHAQSSVTL YGILDAGITY VNNTGGSHVV KFDDGVAYGN RFGLKGTEDL GGGLKAVFVL ESGFHLGNGQ LGFGGSEFGR QAYVGLQNDW GTLSFGNQLD ITNELVSIYN ISAWGSGYAI HQGDFDRFNG DRLPNSVKFL SNDLSGFKFG AMYSFGNVAG NFHRNSAWSA GASYTKGDFS IGAAYTRLNN PNGIYAFDPY AMIGTHTFLG QQTVTVDPAT GARTDLFANT AMDVDSQGTF GVGTSYTIGK LTLDANYSYT TIKGFGQSSH MQVYEGGGLY QFTPALSFIA GYQHTRFEGH HWNQGTAGLH YLLSKRTDVY ISGDYLRASH GVDAVVGYSF TPSTTQTQAD VRIGMRHSF
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