| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_4451 |
|---|
| Symbol | |
|---|
| ID | 4313344 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008391 |
|---|
| Strand | - |
|---|
| Start bp | 1390018 |
|---|
| End bp | 1390782 |
|---|
| Gene Length | 765 bp |
|---|
| Protein Length | 254 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 638152291 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_776336 |
|---|
| Protein GI | 115359198 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.387119 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGATTGC AGGGCAAGCG CGCGCTGGTG ACGGCGGCCG GGCAGGGGAT CGGCCGCGCG
ACCGCGCTGC GGTTCGCAAG CGAGGGCGCC GACGTGCTGG CGACCGACAT CAACGAAGCC
GCGCTCGCGC AACTCGCGGC CGACGCCGAA CGCGCGGGCG GCCGCCTGAC GACGCGGCGG
CTCGACGTCA CCGACGCGGG CGACATCGCG GCACTCGCCG CGCAGGAGCG CGCGTTCGAC
GTGCTGTTCA ACTGCGCCGG CTACGTGCAC CACGGCTCGA TCCTCGACTG CGACGACGCC
GCCTGGGCGT TTTCGCTGAA CCTGAACGTC ACGTCGATGT ACCGGCTGAT CCGCGCGCTG
TTGCCGGCGA TGCTGGAAGC GGGCGGCGCG TCGATCATCA ACATGGCGTC GGCCGCGTCG
AGCGTGAAGG GCGTGCCGAA CCGCTTCGTC TACGGCACGA CCAAGGCGGC CGTGATCGGC
CTCACCAAGT CGGTGGCCGC CGATTTCGTC GAGCAGCGCA TTCGCTGCAA CGCGATCTGC
CCGGGCACGA TCGAGTCGCC GTCGCTCGAA CAGCGGATCG CCGAACAGGC GCGCACGCGC
CAGGTGTCGA CCGACACGGT GCGCCAGGCG TTCGTCGCGC GGCAGCCGAT GGGCCGTATC
GGCACCGCGG ATGAAGTCGC CGCGCTCGCG CTGTATCTGG CGTCCGACGA AGCGTCGTTC
ACCACCGGCG CGATTCACCT GATCGATGGC GGCTGGTCAA ACTGA
|
|---|
| Protein sequence | MRLQGKRALV TAAGQGIGRA TALRFASEGA DVLATDINEA ALAQLAADAE RAGGRLTTRR
LDVTDAGDIA ALAAQERAFD VLFNCAGYVH HGSILDCDDA AWAFSLNLNV TSMYRLIRAL
LPAMLEAGGA SIINMASAAS SVKGVPNRFV YGTTKAAVIG LTKSVAADFV EQRIRCNAIC
PGTIESPSLE QRIAEQARTR QVSTDTVRQA FVARQPMGRI GTADEVAALA LYLASDEASF
TTGAIHLIDG GWSN
|
|---|
| |