Gene Bamb_4421 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_4421 
Symbol 
ID4313315 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008391 
Strand
Start bp1357594 
End bp1358454 
Gene Length861 bp 
Protein Length286 aa 
Translation table11 
GC content71% 
IMG OID638152262 
ProductAraC family transcriptional regulator 
Protein accessionYP_776307 
Protein GI115359169 
COG category[K] Transcription 
COG ID[COG2207] AraC-type DNA-binding domain-containing proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.707997 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00308382 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGACGACAG CGGCAAAGAA TCCCGACACG CGCGACCACT GGCTCGTCGC GCGACGCGAT 
GCGGAAACCG GCATCGAAAG CCTGCACGCG CATTTCAACG GCCATGCGTA CGATGCGCAC
GATCACGACG ACATGCTGGT CGGCTTCACC GAACAGGGCG TGCAGCGTTT CCAGTGCCAC
CGTTCGCTGC ATACGAGCGT GCCGGGCCGC GCGATCCTGA TCGAACCCGG CGCGATGCAC
GACGGCCATG CGCCCGAAGC GGGCGGCTTC ACCTACGGGA TGCTGTACCT GCCGCAAGCC
TGGGTCGAAC GCGCGGCGCG CCGGCTGGAC CTGCCGGGCC TCGGCAGCGT CGAAGCCGCG
TTCGGCCATA CGCTCGTCGA CGATCGCGGC CTCGTCGATG CGATCCGGCA TGCGTTTGTC
GCGATCCACG GCAATGAAGG CCGGCTCGCG CGCGACCAGA CGCTCGACCG CCTGCTGACG
CGGCTCGGCG GCGAACTGCG GGGCGCCCCG CTCGCGCTGG AAAGCAGCGT CGTGCCGCCG
GCGATCGCGC GTGTGCGCGA TCTGCTGCAT GCACACATGG ATGGCAATCT CGGCCTCGAC
GAGCTGGCCG GCGCCGCGGG GATCGACCGG TTCCGCTTGA CGCGGCTGTT CCAGCGCGCG
TATGGCACCT CGCCGCACGC GTACCTGGTG CGCTTGCGGC TGCGCGCCGC GCGCCGGCTG
CTGGCGGCCG GCCGCACGCC CGCCCAGGCG GCCGCGGACG TCGGCTTCGC CGACCAGAGC
CACCTGGGCC GCTGGTTCCG CCGCGCGTAC CGGATTACGC CGGCCGCGTA CCGGCAACTG
TGCACAAACG TTCCAGACTG A
 
Protein sequence
MTTAAKNPDT RDHWLVARRD AETGIESLHA HFNGHAYDAH DHDDMLVGFT EQGVQRFQCH 
RSLHTSVPGR AILIEPGAMH DGHAPEAGGF TYGMLYLPQA WVERAARRLD LPGLGSVEAA
FGHTLVDDRG LVDAIRHAFV AIHGNEGRLA RDQTLDRLLT RLGGELRGAP LALESSVVPP
AIARVRDLLH AHMDGNLGLD ELAGAAGIDR FRLTRLFQRA YGTSPHAYLV RLRLRAARRL
LAAGRTPAQA AADVGFADQS HLGRWFRRAY RITPAAYRQL CTNVPD