| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_4417 |
|---|
| Symbol | |
|---|
| ID | 4313311 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008391 |
|---|
| Strand | - |
|---|
| Start bp | 1353409 |
|---|
| End bp | 1354293 |
|---|
| Gene Length | 885 bp |
|---|
| Protein Length | 294 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 638152258 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_776303 |
|---|
| Protein GI | 115359165 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.0255776 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAGGTA GAAAGGGAGC TAATACCTTG GGACGCTCGC TCGAAATCGA CCTGCTGCGC
TCGTTCGTCG TCATCGCCGA GGTGCGCTCG CTGAGCCGCG CGGCGGCGCG GGTCGGCCGC
ACGCAGTCGG CGCTCAGCCA GCAGATGCGC CGGCTCGAGG AAAGCGTCGA CCAGCCGCTG
TTCCAGCGCA CCGGCCGCGG CGTGCTGCTG ACGCACCCCG GCGAGCGGCT GCTCGTGCAT
GCGCAGCGGA TCCTCCGGCA GCATGACGAG GCGATGGCTG ATCTGTGTGG CACGGGGCTG
TCGGGGACGA TCCGGTTCGG GTGTCCGGAC GATTACGCCC AAGTGTGGCT GCCGTCGCTG
TTGCGGCAGT TTTCGAGCCA GCATCCGCAG GCGATCGTCG AAGTCGTGTG CGGGCCGACG
CCGCGGCTCG TCGAGCAGTT GGAGAAGCGC GCAGTGGATC TGGCGATGAT TTCCGTGCCG
GATGATGGCG CGACGGGCGA CATCATCCGT CGCGAGCAAC TGGTCTGGAT CGGTTATCCG
GGCCTCGATG CCGCGCAGTT CGAGCCGTTG CCGCTCGCGC TTTCCGATCC CGATACGCTC
GATCACATCG CGGCCCGCGA CGCGTTGCAT CGCGCGGGCC GCGATTATCG CGTCGCGTAT
GCGAGCAGCA GCCTCGCGGG GTTGACCGCG CTCGTGCGTT CGGGGCAGGC GTTTGCAGTG
ATGACGCAGA CGGCGGTGCC GGCCGATCTG GCGATTCTCG CTGGCGATCG CGGGCTGCCG
CCGCTGCCGG CGGTGGGCAT TACGCTGCGC TTCGACCGGA AGCGGCCGTC GCATCTGGCG
GCAGCGTTTG CGGAGCATAT CCGGGCGGTG TTGCCGGTGC TGTGA
|
|---|
| Protein sequence | MQGRKGANTL GRSLEIDLLR SFVVIAEVRS LSRAAARVGR TQSALSQQMR RLEESVDQPL
FQRTGRGVLL THPGERLLVH AQRILRQHDE AMADLCGTGL SGTIRFGCPD DYAQVWLPSL
LRQFSSQHPQ AIVEVVCGPT PRLVEQLEKR AVDLAMISVP DDGATGDIIR REQLVWIGYP
GLDAAQFEPL PLALSDPDTL DHIAARDALH RAGRDYRVAY ASSSLAGLTA LVRSGQAFAV
MTQTAVPADL AILAGDRGLP PLPAVGITLR FDRKRPSHLA AAFAEHIRAV LPVL
|
|---|
| |