| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_4403 |
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| Symbol | |
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| ID | 4313297 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008391 |
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| Strand | + |
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| Start bp | 1341099 |
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| End bp | 1342985 |
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| Gene Length | 1887 bp |
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| Protein Length | 628 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 638152243 |
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| Product | Fis family GAF modulated sigma54 specific transcriptional regulator |
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| Protein accession | YP_776289 |
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| Protein GI | 115359151 |
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| COG category | [K] Transcription
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3284] Transcriptional activator of acetoin/glycerol metabolism |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.235944 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCTCAAC CTTTCGTGCT GCCCGCCACC GCGGGCCGCA ACGACCTGCT CGCGCAGGCG
CATGCCCGTT CGACCGCGGT CGGCCTGCGC GCCAACGAGC GCCCCGATTT CTCGCCGCTG
TCGCGCGTCG CGCTGCGCGA ACTGCTCGAC ACGAACCACG CGCTGTTCGC GCACGCGCGC
CCGGTGATGG AGAACCTCCA CGCGCAGATC GCCGACACGC AAAGCCTCGT GCTGCTCACC
GATGCCGACG GCGTGATCCT GCACAGCATC GGCGACGCGG ACTTCATCGA GAAAGCCAAC
CGCGTCGCGC TGTGCACCGG CGTGTCGTGG GCCGAAGGCG CACGCGGCAC CAACGCGATC
GGCACCGCGC TCGCGTCGGG CCAGGCGCTC GCCGTGCATG GGTCCGAACA CTTCCTGCGC
GCGAACCATA TCCTCACCTG CTCGTGCGCG CCGATCATCG ACCCGTTCGG CCGCACGCTC
GGCACGCTCG ACGTGAGCGG CGACCCGCGC GGCTTCAGCC CCCATACGCT CGCGCTCGTT
CGGATGTCCG CGCAACTGAT CGAGAACCAC CTGTTCGCGA ACCAGTGCGC GGAAGCGCTG
CGGCTGCGCT TCCATGCACA CGAGGATTGC GTGGACTCGC TGTTCGCCGG GCTCGTCGCG
TTCGGCCCCG ACGGCGGGCT GATCGCCGCG AATCGCAGCG CGCAATTTCA GCTCGGCGCC
ACGTTCGATG CGTTGCAGCA TCACGGCTGC GACGCACTGT TCGGCATGCA CTTCGGCGAA
CTCGCGCAGC AGGCGGCCCG CGCCGCCGGC GCACCGTTCC GCCTGACGCT GTCGACCGGC
GTGCGCGTGC TCGCGCGCTG CGAATTCGCG GAAGCGCACA AGACGGCCAT CGCCGTCTCG
CCGCCCGCCT CCGCCGTGCG CCTGCGCGCG CCGGACCCCG ACGCCATCAC GTTCGCGACG
CTCGACACCG GCGATGCGCG GATGGCCGCC GTGCTCGAAC GCGTCGCGAA GATCCGCGGA
CGCGACCTGC CGCTGCTGAT CCTCGGCCAG ACCGGCACCG GCAAGGAATG GCTCGCGCGT
GCGCTGCATC AGGCGTCGCC GCGCGCGGAC GGACCGTTCG TCGCGGTCAA CTGTGCGGCG
CTGCCGGATT CGCTGATCGA GGCCGAACTG TTCGGCTACG AGGACGGCGC ATTCACCGGC
GCGCGCAAGC GCGGCAGCCC CGGCAAGATC GCGCAGGCCG ACGGCGGCAC GCTGTTTCTC
GACGAAATCG GCGACATGCC GCTCGCGCAG CAGGTCAGGC TGATGCGCGT GCTGCAGGAG
CGCGCGGTGA TGCCGCTCGG AGGCGCACGC GCGGTGCCGG TCGACGTGCG CGTGGTCTGC
GCGACCCACC GCGACCTGCG CGCGATGATC GCGGAAGGCA CGTTCCGCGA AGACCTGTTC
TACCGTATCA ACGGACTCGC GGTCACGCTG CCGGCGCTCG CCGCCCGCAC CGACCTGCCG
GCGCTGGTCG AGCGAATTCT CGCGCGGCTT GCGCGCAGCG AACCGATGCC GGGCCGCGTC
GCGGCCGACG TACTCGACGC GTTCATGCGG CACCGCTGGC CCGGCAACCT GAGGCAAATG
ACCAACGTGC TGCGTACGGC CGGCATGCTC GCCGAGGACG AACCCGAAAT CACGCTCGCG
CACTTGCCGG ACGATTTCTG GCTCGACTGC GACAACTCGC CCACAGCGAA AGCACCGGCC
GATACGCGCG CAGCGACGAC GCTGCAGAGC CACCAGGCCG CGGTGATCGA CGCGGTGCTC
GCGCGGCATG GCGGCAACGT ATCGGCCGCC GCGCGTGAGC TCGGGCTCGC GCGCAACACC
GTGTACCGCT ACCTGCGGCG ACACTGA
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| Protein sequence | MPQPFVLPAT AGRNDLLAQA HARSTAVGLR ANERPDFSPL SRVALRELLD TNHALFAHAR
PVMENLHAQI ADTQSLVLLT DADGVILHSI GDADFIEKAN RVALCTGVSW AEGARGTNAI
GTALASGQAL AVHGSEHFLR ANHILTCSCA PIIDPFGRTL GTLDVSGDPR GFSPHTLALV
RMSAQLIENH LFANQCAEAL RLRFHAHEDC VDSLFAGLVA FGPDGGLIAA NRSAQFQLGA
TFDALQHHGC DALFGMHFGE LAQQAARAAG APFRLTLSTG VRVLARCEFA EAHKTAIAVS
PPASAVRLRA PDPDAITFAT LDTGDARMAA VLERVAKIRG RDLPLLILGQ TGTGKEWLAR
ALHQASPRAD GPFVAVNCAA LPDSLIEAEL FGYEDGAFTG ARKRGSPGKI AQADGGTLFL
DEIGDMPLAQ QVRLMRVLQE RAVMPLGGAR AVPVDVRVVC ATHRDLRAMI AEGTFREDLF
YRINGLAVTL PALAARTDLP ALVERILARL ARSEPMPGRV AADVLDAFMR HRWPGNLRQM
TNVLRTAGML AEDEPEITLA HLPDDFWLDC DNSPTAKAPA DTRAATTLQS HQAAVIDAVL
ARHGGNVSAA ARELGLARNT VYRYLRRH
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