| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_4328 |
|---|
| Symbol | |
|---|
| ID | 4313222 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008391 |
|---|
| Strand | + |
|---|
| Start bp | 1254476 |
|---|
| End bp | 1255651 |
|---|
| Gene Length | 1176 bp |
|---|
| Protein Length | 391 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 638152168 |
|---|
| Product | porin |
|---|
| Protein accession | YP_776214 |
|---|
| Protein GI | 115359076 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3203] Outer membrane protein (porin) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.428613 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0399975 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAAGG CAGCAGGCTT GAAAACACGC ATTGCGGTTG CGGTGGCGAC GGCGCTGACG
ATACTCGCCG GCAGCAGCAC GGCGGCGCAG GCACAGAGCA GCGTCACGCT GTACGGAATC
ATCGATGAGG GGCTCAACTA CACCAGCAAC GCGAAGGGAC ACGGCACCTT CCAGATGAAG
AGCGGCGACA CCTTCGGCAG CCGCTGGGGC ATCGCCGGCT CCGAGGACCT GGGCGGCGGC
ACGCGCGCGC TGTTCCGCCT CGAGAACGGC TTCGACGTGA ACAGCGGCGC CTTCAGGCAG
GGCGGCCGCG AGTTCGGCAG GCAGGCCTGG GTTGGCCTGC AGTCGGACCG GCTCGGCACG
CTCTCGTTCG GCCGCCAGTA CGACCCGACC ATCGACCTCT GGAGCGGGCT GACCGGCGCG
GGGGGCGTGA GCGGCGACGT CGCCTCGCAT CCGTTCGACA ACGACAACGC CGACTTCGAT
TTCCGCGTCA ACAACTCGGT CAAGTACACC AGCCCGAACT TCAATGGCCT GAAGGCCGAG
GCGATGTACG GCTTCAGCAA CGACACCGGC TTCGCCAACA ACCGGCTCTA CAGCGCCGCG
CTGCAATATA AGCTGGCGGG CCTGACCGCC GCGCTCGGCT ACCTGAAGAT CGACGCGGGC
GGCTCGGCCA ACGGCGCGGT GTCCACTGAC GCGGTGTTCA CCGGCTCGTC CGAGCAGAAC
ATCGTGGCGG GGCTGTCCTA CGCGTTCGCG GCCACCAAGC TGGGCCTGGC CTACTCGCAC
GTCGACGTCT ACGACCCGAC CGCCAACGCC TATATCGCCT CGACGGCCAC CAGGCCGCCG
GGCGGGCGCT GGCAGTCCTG GAAGTTCGAC AACTTCGAGG TCAATGCGAA GTACGCCTTC
ACGCCGTCGC TCTGGCTGTT CGGCGCCTAC ACCTTCACCG AGGCGCGCCT GCACGCGAGC
ACCGGCGATT TCGAGCCGAA GTGGCACCAG CTCTCGCTGA TGCTCGACTA CGACCTCAGC
AAGCGCACCT CGCTCTACAT GCAGGCGGCC TACCAGCACG TGGTCAGCGC GCATACCGGC
ACGGCCTTCG ATTTCGCCAC CACACCCGCC TCGGCCGGCG CCTCGTCGGG CGAGAACCAG
ACCCTGGTGC GGCTCGGCAT GATCCATCGC TTCTAG
|
|---|
| Protein sequence | MSKAAGLKTR IAVAVATALT ILAGSSTAAQ AQSSVTLYGI IDEGLNYTSN AKGHGTFQMK
SGDTFGSRWG IAGSEDLGGG TRALFRLENG FDVNSGAFRQ GGREFGRQAW VGLQSDRLGT
LSFGRQYDPT IDLWSGLTGA GGVSGDVASH PFDNDNADFD FRVNNSVKYT SPNFNGLKAE
AMYGFSNDTG FANNRLYSAA LQYKLAGLTA ALGYLKIDAG GSANGAVSTD AVFTGSSEQN
IVAGLSYAFA ATKLGLAYSH VDVYDPTANA YIASTATRPP GGRWQSWKFD NFEVNAKYAF
TPSLWLFGAY TFTEARLHAS TGDFEPKWHQ LSLMLDYDLS KRTSLYMQAA YQHVVSAHTG
TAFDFATTPA SAGASSGENQ TLVRLGMIHR F
|
|---|
| |