| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_4305 |
|---|
| Symbol | |
|---|
| ID | 4313200 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008391 |
|---|
| Strand | - |
|---|
| Start bp | 1233547 |
|---|
| End bp | 1234422 |
|---|
| Gene Length | 876 bp |
|---|
| Protein Length | 291 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 638152146 |
|---|
| Product | 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase |
|---|
| Protein accession | YP_776192 |
|---|
| Protein GI | 115359054 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0179] 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAAACTGA TCACGTTTAA ACAGAACGGC GACACGCGGC TTGGCGTACT CGACGGCAGC
GACGTCATCG ACCTGAACCG CGCGGACCCG GCCGTCCCGG CCGACTTGCG CGCGGCGCTC
GAGGCGGGCG TGGACGTCGT CGCGGCGGCG CGCAACGCGG CCACCCGTGC TGACGTGGGC
AATCGCATTC CCTTGTCCGA AGTGGAGTTG GCGCCGGTGG TGCCGAAGCC CGGCAAGATC
GTCTGTCTGG GCCACAATTT CTACGACCAC GCCAAGGAAG GCGGCAACCT GAAGCCCGTC
TATCCGCTGA TCTTCTTCCG CGGCGCGACC TCGCTGATCG CGCATGGCGA TCCCGTGATT
CGTCCGTTCG TGTCCGAAAA GCTCGACTAT GAAGCCGAAT TGGTCGTCGT GATCGGCAAG
ACAGGCCGCC ACGTGAAGCG CGAAAACGCG CTCGACCACG TGTTCGGCTA CGCCTGCTTC
AACGACGTCT CGGTGCGCGA CTATCAGAAG CGCACGGCGC AATGGACAAT CGGCAAGAAC
TTCGACGGCA CCGGCGCATT CGGCCCCTGG CTCGTGACGT CCGACGAATT GCCGCCGGGC
GCGGCGGGCC TGAAGCTCGA ATTGCGCCTG AACGGCGAGG CGATGCAGCG CGCGAATACG
GCCGACATGA TCTGGAGCGT CGCCGAGACG ATCGAGCTCT TGACCGAGTG CCTCACGCTC
GAGCCCGGCG ACGTGGTGGT GATGGGCACG CCCGCGGGCG TCGGCTTCGC GCGCACGCCG
CCGGTGTGGA TGAAGGCCGG CGATCGCGTG GAAGTGGATA TCGAAGGCAT CGGCGTGCTG
TCGAACGTCG TGCAGGACGA GGCTGCGGCG CAGTGA
|
|---|
| Protein sequence | MKLITFKQNG DTRLGVLDGS DVIDLNRADP AVPADLRAAL EAGVDVVAAA RNAATRADVG
NRIPLSEVEL APVVPKPGKI VCLGHNFYDH AKEGGNLKPV YPLIFFRGAT SLIAHGDPVI
RPFVSEKLDY EAELVVVIGK TGRHVKRENA LDHVFGYACF NDVSVRDYQK RTAQWTIGKN
FDGTGAFGPW LVTSDELPPG AAGLKLELRL NGEAMQRANT ADMIWSVAET IELLTECLTL
EPGDVVVMGT PAGVGFARTP PVWMKAGDRV EVDIEGIGVL SNVVQDEAAA Q
|
|---|
| |