Gene Bamb_4275 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_4275 
Symbol 
ID4313170 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008391 
Strand
Start bp1199695 
End bp1200456 
Gene Length762 bp 
Protein Length253 aa 
Translation table11 
GC content70% 
IMG OID638152116 
Productcell wall hydrolase/autolysin 
Protein accessionYP_776162 
Protein GI115359024 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0860] N-acetylmuramoyl-L-alanine amidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.126067 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACACACC GAACCGTTCG ACGCCTTCGC CCGTTCGCTC GCGCCGCCGC GCGCCTGCTC 
GCGTGCGCCC CGCTGCTGGC CGCGCCGCCG GCGCTGCATG CGGCCGATGC CGCCAGCCCG
GACGCGCAGC CCGCGTCCGG CCGCTACATC GTCGTCGACA CCGGCCATAC GCCGGCCCGC
CCGGGTGCAA CCGGCGCGAG CGGCCGCGTC GAATACCGGT ACAACCTCGA TCTGTCCACC
GCCGTCGCCG AGAAGCTCGC CACGCACGGC GACCGCGTGC TGCGTACGTC GGCCGACGGC
CGCGAGATCA CGCTCGACCA GCGTTCGACG CAGGCGCCCG ACGCGAACCT GTTCGTGTCG
ATCCATCACG ATTCGATGCA GCAGCAGTTC ATCGACGCGG GGCGGCAACG CGAATTCCGC
GGTTTCGCCG TGTTCGTGTC GGAACGCAAT CCGCACTATG CGGAAAGCCT GCGTTGCGCG
AAGTCGATCG CCGAGCGGCT GATCGCGGCC GGCGAACGGC CGTCGCTGTA TCACGCGCAG
CCGATCAAGG GCGAGAACCG CCCGCTGATC GATCCGCAAC TCGGCATCCA TCGCTTCGAC
GATCTCGTCG TGCTGCGCAC CGCACCGATT CCGGCCGTGC TGGTCGAGGC CGGCGTGATC
GTCAATCCCG ACGAGGAAAA GCGTCTCGCG CAGCGCGAGA CGATCCAGCG TCTCGCCACC
GCGATCGCGG GCGGGATCGA TGCGTGTACG GCGGCAAGGT AG
 
Protein sequence
MTHRTVRRLR PFARAAARLL ACAPLLAAPP ALHAADAASP DAQPASGRYI VVDTGHTPAR 
PGATGASGRV EYRYNLDLST AVAEKLATHG DRVLRTSADG REITLDQRST QAPDANLFVS
IHHDSMQQQF IDAGRQREFR GFAVFVSERN PHYAESLRCA KSIAERLIAA GERPSLYHAQ
PIKGENRPLI DPQLGIHRFD DLVVLRTAPI PAVLVEAGVI VNPDEEKRLA QRETIQRLAT
AIAGGIDACT AAR