| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_4273 |
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| Symbol | |
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| ID | 4313168 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008391 |
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| Strand | + |
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| Start bp | 1196413 |
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| End bp | 1197927 |
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| Gene Length | 1515 bp |
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| Protein Length | 504 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 638152114 |
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| Product | spermidine synthase |
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| Protein accession | YP_776160 |
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| Protein GI | 115359022 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4262] Predicted spermidine synthase with an N-terminal membrane domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0733287 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGCATA AGCGCGCGCT CGTCCTGTCG ATCCTCGTGC TCGCGTCGTG CGGGCTCGGC
TACGAACTGA TCAGCAGCGC GCTGGCGAGC TACCTGCTCG GCGATTCGAT CCTGCAGTTC
TCGTCGGTGA TCGGCTGCTA CCTGTTCGCG ATGGGGATCG GCTCGTGGCT CGCGAAGTTC
GTCGAGGACG ACGACGTGCT CGACCGCTTC GTCGACATCG AGCTGCTCGT GGGCCTGCTC
GGCGGCGTGT CGGCCGCGCT GCTGTTCGCG GTGTTCGGCT GGCTGGCCGC GCCGTTTCGC
GCGGCGCTCT ACGCGCTCGT GCTCGCGCTC GGCCTGCTGA TCGGGATGGA GATCCCGCTC
GTGATGCGTG CGTTCCAGCA GCGCCGCCAG GCGTTCCGCC ATACCGTCAG CGAGGTGCTG
ACCTTCGACT ATCTCGGCTC GCTCGCCGTG TCGCTGATCT TCCCGCTCGT GCTCGCGCCG
CGTCTCGGCC TGTTGCGCAC GAGCTTCCTG TTCGGGCTGC TCAACGCGTT CGTCGCGCTG
TGGACGACGC ACCTGTTCCG CGACGAGATC CGCAACGTGC GCGGCAAGCT GATGCGCGCG
TCGCTCGTGA TCGGGCTGCT CGTCGCCGGC TTCGCGCTGT CGGAGCGCAT CACGCACTGG
GCCGAACACG GCGTGTACGG CGACGAGACG GTCTATTCGG AAACCACACC CTATCAGCGC
ATCGTGCTCA CGCAGTGGCA CGACGACATG CGGCTGTACC TGAACGGCAA CCTGCAGTTC
TCGTCGCGCG ACGAGCATCG CTATCACGAG GCGCTGATCC ATCCGACGAT CGAAGCGCTG
CCGTGGGCGA AGCGCGTGCT CGTGCTCGGC GGCGGTGACG GCCTCGCGGT GCGCGAACTG
CTCAAGCACC GCAACCTCGA ACAGATCACG CTCGTCGATC TCGATCCGGC GATGACGAAG
CTGTTCTCCA CCTCCGTGCC GCTCGTGAAG CTGAACCAGG GTTCGCTGAA GGACCCGCGC
GTGCAGGTGA TCAACGCCGA CGCGGTGCGC TGGCTCGAAT CGAGCGCCGA CGTGTACGAC
GCGATCGTCG TCGACTTCCC CGACCCGACC AACTTCGGGC TCGGCCGGCT GTATTCGGTG
CCGGTGTTCC GGCTGCTCGC GCGCCACCTG TCGGAGAACG GCTATACGGT GATCCAGTCG
ACGTCGCCGT ATTTCGCGCC GCACGCGTAC TGGACGATCG TCGCGACGCT GCACGAAGCC
GGACTCAACA CGTGGCCGTA CCACTGCTAC GTGCCGTCGT TCGGCGACTG GGGTTTCGTG
ATCGCCGGCA AGCGCCGCGA CTTCACCGTG CCGACGCACT ATTCGGTGCC GACGCGCTGG
CTCGACGCGC AGACGGCCGT CGAGATGTTC CACTTCCCGG CCGACATGCC GGCGCGGCCG
ATGTCGCCGA ACGAACTCAA CGACCAGCCG CTCGTGCGCC GCTTCGACGA CGACTGGAAG
CACGTGCTGC GCTGA
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| Protein sequence | MLHKRALVLS ILVLASCGLG YELISSALAS YLLGDSILQF SSVIGCYLFA MGIGSWLAKF
VEDDDVLDRF VDIELLVGLL GGVSAALLFA VFGWLAAPFR AALYALVLAL GLLIGMEIPL
VMRAFQQRRQ AFRHTVSEVL TFDYLGSLAV SLIFPLVLAP RLGLLRTSFL FGLLNAFVAL
WTTHLFRDEI RNVRGKLMRA SLVIGLLVAG FALSERITHW AEHGVYGDET VYSETTPYQR
IVLTQWHDDM RLYLNGNLQF SSRDEHRYHE ALIHPTIEAL PWAKRVLVLG GGDGLAVREL
LKHRNLEQIT LVDLDPAMTK LFSTSVPLVK LNQGSLKDPR VQVINADAVR WLESSADVYD
AIVVDFPDPT NFGLGRLYSV PVFRLLARHL SENGYTVIQS TSPYFAPHAY WTIVATLHEA
GLNTWPYHCY VPSFGDWGFV IAGKRRDFTV PTHYSVPTRW LDAQTAVEMF HFPADMPARP
MSPNELNDQP LVRRFDDDWK HVLR
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