| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_4249 |
|---|
| Symbol | |
|---|
| ID | 4313144 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008391 |
|---|
| Strand | + |
|---|
| Start bp | 1175077 |
|---|
| End bp | 1175736 |
|---|
| Gene Length | 660 bp |
|---|
| Protein Length | 219 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 638152090 |
|---|
| Product | polar amino acid ABC transporter, inner membrane subunit |
|---|
| Protein accession | YP_776136 |
|---|
| Protein GI | 115358998 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0765] ABC-type amino acid transport system, permease component |
|---|
| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.0330968 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAGCAC TCGATCTGGT CATTCATACC CTGCCCGTGA TGGTGAAGGG CGCGCTGCTC
ACGCTGAAGT TCGCGGTGGC GTCGATGGCG CTCGGCCTCG TCGTCGGGCT CGTGGTCGCG
ATCATGCGCA TCGGCAGCAA CCGGCTCGCG TCCGGTCTCG CGCAGGGTTA CGTCAGCCTG
ATGCGCGGCA CGCCGCTGCT CGTGCAGATG TTCGTCGTCT ACTACGGGCT GCCCGATCTC
GGCATCACGC TCGATCCGAC GACGGCCGGC ATTTTCACGC TGACGCTCAA CGCCGGCGCG
TACCTGTCGG AAAGCATGCG CGGCGCGATC CTCGGCATCG GCCGCGGGCA ATGGGCGGCC
GCGCACAGCC TCGGCCTCAC GCACGTGCAG ACGCTGCGTT ACATCGTCTG CCCGCAAGCG
CTGCGCCTCG CGGTGCCGAG CCTCGGCAAC ACGCTGATCA GCCTGATCAA GGACACGTCG
CTCGTGTCGG TGATCACCGT CACCGAGCTG TTGCGCTCGA CGCAGGAAGT CATCGCCGCA
ACCTTCCAGC CGCTGCCGCT GTACCTCGCG GCCGCCGCGC TCTACTGGGT GCTGAGCACG
CTGCTCACGC GGCTGCAGGG CCGCGTCGAA ACGCGTCTGT CGCTGCCGTC CACGCATTGA
|
|---|
| Protein sequence | MEALDLVIHT LPVMVKGALL TLKFAVASMA LGLVVGLVVA IMRIGSNRLA SGLAQGYVSL
MRGTPLLVQM FVVYYGLPDL GITLDPTTAG IFTLTLNAGA YLSESMRGAI LGIGRGQWAA
AHSLGLTHVQ TLRYIVCPQA LRLAVPSLGN TLISLIKDTS LVSVITVTEL LRSTQEVIAA
TFQPLPLYLA AAALYWVLST LLTRLQGRVE TRLSLPSTH
|
|---|
| |