Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bamb_4248 |
Symbol | |
ID | 4313143 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria AMMD |
Kingdom | Bacteria |
Replicon accession | NC_008391 |
Strand | + |
Start bp | 1174202 |
End bp | 1175002 |
Gene Length | 801 bp |
Protein Length | 266 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 638152089 |
Product | extracellular solute-binding protein |
Protein accession | YP_776135 |
Protein GI | 115358997 |
COG category | [E] Amino acid transport and metabolism [T] Signal transduction mechanisms |
COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.0312845 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGCCCT TCACCCCGAC GCTCAAGCAA GGCCTCGCCG CCGCCCTCCT CTGCGTGGTG GCCACCGCGT CGCACGCGGC GGATCTGCTC GACACCGTCA AGCAGGCCGG CGTGCTGAAG ATCGCACTCG AAGGCACCTA CCCGCCGTTC GACTACCGCA ATGCCGAAGG ACAACTCGAA GGATTCGACG TCGACGTCGC GAAGGCGGTC GCCGCGCGGC TCGGCGTGAA GCCGCAGTTC GTCACGACGG AATGGAGCGG GATTCTCGCC GGGCTGCAGG CCGGCAAGTT CGACGTGATC GTCAACCAGG TCGCGATCAC GCCGTCGCGC CAGCAGGCGC TCGATTTCAG CATGCCGTAC GTGTATTCGT CCGCGCAGCT GCTGCAACGC CAGAACGACA CGCGTGCGTT CAAGTCGCTC GACGAGCTGA AGGGCAAGAA GGTGGGCGTG ACGATGGGCA GCAACTACGT CGATCTCGTG AAGACGGTGC CCGCGATCGA TCTGCAGGTC TATCCGGGCA CGCCGGAAAA CCTGCGCGAC CTCGCGGCGG GACGTATCGA CGCGGCAGTC AACGACCGCC TGATGCTGAG CTACCTGATC AAGAACTCAC ACCTGCCGCT GCGCCCCGGC TCCGTGCTCG CCGGCGGCGA GGACCGGATG GGCATCCCGT TCCGCAAGGG CAATCCGAAG TTCGCGAAGG CGATCGACGA CGCGGTCGCG TCGCTGCAGC AGGACGGCAC GCTGAAGAAG ATCTCGATGC AGTGGTTCGG CACGGACACG ACGCGGCCGG TCGCGCAATA A
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Protein sequence | MKPFTPTLKQ GLAAALLCVV ATASHAADLL DTVKQAGVLK IALEGTYPPF DYRNAEGQLE GFDVDVAKAV AARLGVKPQF VTTEWSGILA GLQAGKFDVI VNQVAITPSR QQALDFSMPY VYSSAQLLQR QNDTRAFKSL DELKGKKVGV TMGSNYVDLV KTVPAIDLQV YPGTPENLRD LAAGRIDAAV NDRLMLSYLI KNSHLPLRPG SVLAGGEDRM GIPFRKGNPK FAKAIDDAVA SLQQDGTLKK ISMQWFGTDT TRPVAQ
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