| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_4230 |
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| Symbol | |
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| ID | 4313125 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008391 |
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| Strand | - |
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| Start bp | 1152320 |
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| End bp | 1154569 |
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| Gene Length | 2250 bp |
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| Protein Length | 749 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 638152071 |
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| Product | type III secretion FHIPEP protein |
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| Protein accession | YP_776117 |
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| Protein GI | 115358979 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4789] Type III secretory pathway, component EscV |
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| TIGRFAM ID | [TIGR01399] type III secretion protein, HrcV family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.708794 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGGCCC GCGCCCGCCG GCAACAACGA CAGGACGACG GCACGATGGC AGAACCGAAG
GCGCTCCCTC GCGACTGGCA GCGGATCTTT TCCGCCGGCC GCAGCGTGTC CGGGCGGCGC
CTCGGGGCGT CGCCGCGCGC CGACCTGTTT CTCGCCGGCT TCATCGTGTC GGTGGTCGCG
CTGTTCATCC TGCCGCTGCC GCAGGCCGCG CTCGACGGGA TGATCTCGCT GAACCTTGCG
GCGAGCGTCG TGCTGCTGAC GGTATCGACC TACGTGCCGT CGGCGGTCAG TTTTTCGTCG
TTTCCCGCGC TGCTGCTGTT CACCACGCTG TTCCGGCTCG CGCTGAACAT CGCGTCGTGC
AAGCTGATCC TGCTGCACGC GAACGCGGGC CATGTGATCG ACGCGTTCGG GCGGCTCGTG
GTCGGCAATA ACGTCGTGGT GGGCGGCGTG GTGTTCCTCG TGATCGCCGT CGTGCAGTTC
ATCGTGATTG CAAAGGGCTC CGAACGGGTC GCCGAAGTCG GCGCGCGCTT CTCGCTCGAC
GCGATGCCGG GCAAGCAGAT GAGCATCGAT GCGGACCTGC GCGCGGGCAT CATCAGCGCC
GACGAAGCGC GCGAGCGCCG CGAGAGGCTC GAGCAGGAAT CGCAGATGCA TGGCGCGATG
GACGGCGCGA TGAAGTTCGT GAAGGGCGAC GCGATCGCCG GCCTCGTGAT CGCGTTCATC
AACATCGTCG CGGGGATCGC GGTCGGCACG CTGATGCACG GCATGGATAT CGGCGAGGCG
CTGCAGCGTT ACGCGATCCT GACGGTCGGC GACGGGATGG CGTCGCAGAT TCCGTCGCTG
CTGGTGTCGA TCGCGGCCGG CATCGTGACG ACGCGCGTCG CGACGCGCGA CACGCGGCAG
CGCCAGCTCG GCGAGCAACT GGGCGAGCAG CTCGGCGCGC ATCCGCGTGC GCTGCTGATC
GCGGCGCTCG TGCTCGCCGG CTTTCTCGTC GTACCCGGTT TCCCGAAATG GTCGTTCGCA
TTGATCGCGC TCGGCCTCGG CGCGTTCGCC GTCACGCAGC TCAAGCGCAA GACGACCGCG
CCGAGCTTCA ACCTGATTCA TATTGCCGGA CGCATCGGCG CGACCGACGA CGGCCAGCCC
GCGAAGGTGT CGCATGCGGC GGGCGTCACG TCGCTGATCG CGGTGTCGCT GTCGGACGAC
CTGCGCACGA CGCTGAATCT CGCGCAGCTG CAGACCGCGC TGTCGAGCGC GAAGGCGCGC
GTCGACGCGG ATATCGGCAC GGTGTTTCCG CGCATCACGC TGAACGACGA CGAGGGCGCG
CCGGCCGGCA CCTACCGGAT CTATTTGCAG GACGTGCTCG CCGCGCATGG CGCGCTGAAG
CCGGGCTGGC TGCTGTGGGA CGGCGTCGCG CCGCTGCCGG AACGCGCGGA GCGCCAGCCG
GCCGAGGCCT TCGGCCCGTT CGCGACCGCG CTGTGGATCA AGCCCGACGG CGCGGCGCCG
GACGGCAAGT GGCTGACGAG CGAAGGCGCG CTCGCCGCGC ACGTCGAGCA GGTCGTGCGC
CAGCACGCGG ACGAGCTGCT CGGCATCCAG GAGACGCAGG CGCTCGTGCA CCTGGTGCGC
CGCGAGCATC CCGAACTGGT CGGCGAACTG ACGCGGCTCG TGCCGCTGCA GCGCGTGACC
GAGGTGCTGC GCCGGCTGCT CGCCGAACAG GTGCCGATCC GCAACCTGCG CGTGATCTTC
GAGAGCCTGA TCACATGGGC GCCGAACGAA CCGGACGACG TGATCGCGCT GGTCGAGCTG
GTGCGCGTCG ACCTGCGCCG GATGATCACC GATCGCCATG CGGGCGCGGC GCGCCAGCTG
CGTGTCGTGC TGTTCGAGCA GAACCTGCAG GAGCGGATCG AGAGCGCGGT GATGCGGACC
AAGCAGGGCA ATTTCCTCGC GCTGTCGAGC GCGATCAAGC AGGACATCGG CGAGCAGGTG
CGCGCGATCG TGCAGGCCGC GCAGGCGGCC GGCGCCGGCG GCCACGGCAA TCCGCAAGGT
GCGCCGCGGC TCGCGGTGAT GGTCGCGCTC GGCGCGCGCC GCTACGTGAA GACGATCTTG
CAGCCGGTGC TGCCCGAGCT CGCGGTGCTG TCGTACCAGG AGGTCGAGGA AGACGTGCAG
CTCCATACGG TCGGCTGGGT GAAGAACCCG CCCGACGACG GCACGCTCGG CGCGGGCGCC
GGCGTGCGCG CGCCCGGAGG CGTGCAATGA
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| Protein sequence | MTARARRQQR QDDGTMAEPK ALPRDWQRIF SAGRSVSGRR LGASPRADLF LAGFIVSVVA
LFILPLPQAA LDGMISLNLA ASVVLLTVST YVPSAVSFSS FPALLLFTTL FRLALNIASC
KLILLHANAG HVIDAFGRLV VGNNVVVGGV VFLVIAVVQF IVIAKGSERV AEVGARFSLD
AMPGKQMSID ADLRAGIISA DEARERRERL EQESQMHGAM DGAMKFVKGD AIAGLVIAFI
NIVAGIAVGT LMHGMDIGEA LQRYAILTVG DGMASQIPSL LVSIAAGIVT TRVATRDTRQ
RQLGEQLGEQ LGAHPRALLI AALVLAGFLV VPGFPKWSFA LIALGLGAFA VTQLKRKTTA
PSFNLIHIAG RIGATDDGQP AKVSHAAGVT SLIAVSLSDD LRTTLNLAQL QTALSSAKAR
VDADIGTVFP RITLNDDEGA PAGTYRIYLQ DVLAAHGALK PGWLLWDGVA PLPERAERQP
AEAFGPFATA LWIKPDGAAP DGKWLTSEGA LAAHVEQVVR QHADELLGIQ ETQALVHLVR
REHPELVGEL TRLVPLQRVT EVLRRLLAEQ VPIRNLRVIF ESLITWAPNE PDDVIALVEL
VRVDLRRMIT DRHAGAARQL RVVLFEQNLQ ERIESAVMRT KQGNFLALSS AIKQDIGEQV
RAIVQAAQAA GAGGHGNPQG APRLAVMVAL GARRYVKTIL QPVLPELAVL SYQEVEEDVQ
LHTVGWVKNP PDDGTLGAGA GVRAPGGVQ
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