| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_4228 |
|---|
| Symbol | |
|---|
| ID | 4313123 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008391 |
|---|
| Strand | - |
|---|
| Start bp | 1150000 |
|---|
| End bp | 1152045 |
|---|
| Gene Length | 2046 bp |
|---|
| Protein Length | 681 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 638152069 |
|---|
| Product | YscC/HrcC family type III secretion outer membrane protein |
|---|
| Protein accession | YP_776115 |
|---|
| Protein GI | 115358977 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1450] Type II secretory pathway, component PulD |
|---|
| TIGRFAM ID | [TIGR02516] type III secretion outer membrane pore, YscC/HrcC family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTCAAC GCGTCGCCCA GATCCGGTTT CAACCGCGCC GCCTGCAACG GGTTGCGCTC
GCCATGTGCG CGACCGCGCT GCTCACGGCG TCGCTGTGCG TGACGATCGC GCAGCCGGCG
CGCGCGGCCG ACCTGCGCTG GCGCAACAAG CCGTTCACGA TCGTCGCGAA CGGCAAGAAG
ATCGGCGACT TCATTCGCGA GCTCGCGTCG TCGCAGGGCG TGACGGCCGT GGTCGATCCG
AAGGTGGACG GTGTGATCAG CGGCCGCTTC TCGGGCACGC CGCAGCAGAC GCTCGATACG
ATCTGCTCGA CCTACGGGCT CACGTGGTAC TACGACGGCT CGTTCCTGTA TGTCGATCCG
GCCGACCAGT CGCAGACGCA GATGATTCCG ATCCCGCCGA ACGCGGCCGG CGAGATCGGC
CGCTCGCTGC AGGCGATGCA GATTCCCGAC AAGCGCTACA CGCTCGTGAT CAACGACCGC
GCGAACAGCG TGTATGTGGC CGGCCCGCGC CGCTATGTCG AACTCGTGCG CCAGGCGGTC
GGCTCGGTCG GCGATCCGTC GGCGAACGGC GCGCATGCGG ACATCCGTGC GTTCCGGCTC
AGGTACGGCT GGGCGTCCGA TTTCACGATC AACCGCTCGG GCAAGGAAGT GACGGTGCCC
GGCGTCGCGA CGATCCTGCG CCGGCTGTTC GGCAAGGGCG GCGGCACGAA CGAGCCGCCG
TCGAGCACGC CGCTCGGGCA GGCCGCGCGC CAGGTGAAGC TCGGCTCGGG GCTGACGATC
GCGGTGCCGC GGCTCGACTT CCCGGACATT TCCGGCGGCT CGCGGCAGGG CAGCTATGGC
GGCGCCGACA GCGCGGCCGG CGGCTTCTCG CCGTTCTCGA ACGCCGGCGG CGGCGACACG
CTGCCGCAGA TCGTCGCCGA TCCGGCGATC AACGCGGTGA TCGTGCGCGA CCTGCCAGAG
AACATGTATC GCTACCAGTC GCTGATCAAC CAGCTCGACG AGCGGCCGCG CATCGTCGAG
ATCAACGTGA CGATCATCGA CATCAACGAG GATTCGCTCG ACAGCCTCGG GATCGACTGG
CGCCTGCACA CGACGCATGG CGACGTGCAG ATCGGCAATG GCCAGAACCC GCTGAACGGC
AACACGCAGT ACAACGGCGC CGGCAACCCG CCGCTGACGT TCGGCATCGG CACCTCCGAA
ACCGGGCAGA CCGGCGCCTT TCTGCCGACC GGTATCGCGC TCACCGCTTC GATCGGCGGC
TCGCTGCGCA ACTACCTGCT CACGCGCGTG AACGCGCTCG CGCAGAAAGG GCAGGCACAG
CTGCGCTCGA AGCCGAAGGT GCTCGCGCTC GACAATACCG AGGCGATTCT CGAGAACCTC
ACGCAGTTCT ACGTGCAGGT GCAGGGCTAC CAGGATTCGT CGCTGTACAG CGTGACGACC
GGCACCAGCA TCAAGGTGAC GCCGATGATC GTCGACGAGG CGATCCGCAA TGCGGCGGCC
GTGTCGGGCA ATCCGCAGAG CGTGATGATG TCGATCGACA TCCAGGACGG CAACATCGTG
CCGGGGCAGG CAGTGTCGAA CGTGCCGGTG ATCCAGCAGC GCAACATCGT CACCAAGACG
ATGATCGACG AAGGCAAGAG CCTGCTGATC GCGGGCTTCA ACGACGACGA GGTGCGGCTG
AACAAGAGCG GTGTGCCGTG GCTGTCGGAC ATTCCGCTGA TCGGCAACCT GTTCAAGTAC
ACCGACAAGT CGGGCAATCA CATGGAGCGG TTCTATCTGC TGACGCCGCG CGTGGTGACG
ACCGCGGCGA TGTACGCGCC GGATGGCTCG CCCGTGAACC CGGGCGCGGG CGCGCCGGCC
GATCCGAACG GCGCGTCGAT GTATCGCCCG CCGGACAACG ACATCGCGGT GCCGCTGACG
CCCGCGCCGC TGCCCGGCAC GAAGTTCGGC CCGCCCGCCT TGCCGCCGCC GCCGTCGTCG
GATTCGGCGT CGCAGCCCGT GGCGACGACC GCAGGAGCGT CCACCCATGT CGACGACCAT
CATTGA
|
|---|
| Protein sequence | MRQRVAQIRF QPRRLQRVAL AMCATALLTA SLCVTIAQPA RAADLRWRNK PFTIVANGKK
IGDFIRELAS SQGVTAVVDP KVDGVISGRF SGTPQQTLDT ICSTYGLTWY YDGSFLYVDP
ADQSQTQMIP IPPNAAGEIG RSLQAMQIPD KRYTLVINDR ANSVYVAGPR RYVELVRQAV
GSVGDPSANG AHADIRAFRL RYGWASDFTI NRSGKEVTVP GVATILRRLF GKGGGTNEPP
SSTPLGQAAR QVKLGSGLTI AVPRLDFPDI SGGSRQGSYG GADSAAGGFS PFSNAGGGDT
LPQIVADPAI NAVIVRDLPE NMYRYQSLIN QLDERPRIVE INVTIIDINE DSLDSLGIDW
RLHTTHGDVQ IGNGQNPLNG NTQYNGAGNP PLTFGIGTSE TGQTGAFLPT GIALTASIGG
SLRNYLLTRV NALAQKGQAQ LRSKPKVLAL DNTEAILENL TQFYVQVQGY QDSSLYSVTT
GTSIKVTPMI VDEAIRNAAA VSGNPQSVMM SIDIQDGNIV PGQAVSNVPV IQQRNIVTKT
MIDEGKSLLI AGFNDDEVRL NKSGVPWLSD IPLIGNLFKY TDKSGNHMER FYLLTPRVVT
TAAMYAPDGS PVNPGAGAPA DPNGASMYRP PDNDIAVPLT PAPLPGTKFG PPALPPPPSS
DSASQPVATT AGASTHVDDH H
|
|---|
| |