Gene Bamb_4222 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_4222 
Symbol 
ID4313117 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008391 
Strand
Start bp1143946 
End bp1145331 
Gene Length1386 bp 
Protein Length461 aa 
Translation table11 
GC content70% 
IMG OID638152063 
Producttype III secretion apparatus H+-transporting two-sector ATPase 
Protein accessionYP_776109 
Protein GI115358971 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1157] Flagellar biosynthesis/type III secretory pathway ATPase 
TIGRFAM ID[TIGR01026] ATPase FliI/YscN family
[TIGR02546] type III secretion apparatus H+-transporting two-sector ATPase 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.0682541 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACGGGC CGCTCGACGA TCCGCAGTCA TTCGGTGACG GCAGCGACGA CGATGCCGCG 
CCGTTCGATC GCGGCCGCCT CGTCGGCGAC CTCGATGCGG GGCTCGCGTT CTTCTCGCCG
GTGTCGGTGC AGGGCCGCGT CAATCATGCG GTCGGACAGA TCCTCAACGC GACCGGGATC
CGCGCGCGGC TCGGGGAGAT CTGCGAGCTG CGCACGCCGA ACCAGCCGAC GCTGCTCGCC
GAAGTGGTCG GCTTCTCGCG GCAGACCACC TTGCTCACGC CGCTCGGCGA CGTGGCCGGC
CTGTCGCCGG AGACGACCGT CGTGCCGTCG GGGCGCGAGC ATGTATTCCC GGTCGGCGAA
GCGCTGTTCG GCCGCGTGCT CGACGGGCTC GGCCGGCCGC TCGACGATCG CGGGCCGGTG
ACGGGCGCCG CGTGGGTCTC GACGCAGCAG GACCCGCCCA ATCCGCTCGC GCGCAAGATG
ATCGACACGC CGTTTCCGAC CGGCGTGCGC GTAATCGACG GCCTGATGAC GCTCGGCATC
GGCCAGCGCG TCGGCATCTT CGCGCCGTCG GGTGTCGGCA AGAGCACGCT GCTCGGGATG
ATCGCGCGCG GCGCGCAGGC CGACGTGAAC GTGATCGCGC TGGTCGGCGA ACGCGGCCGC
GAAGTGCGCG AGTTCATCGA GCACAGCCTG TCGCCCGAGG TGCGCGCGCG CTCGATCGTC
GTCGTGTCGA CGTCCGATCG TCCGGCGATG GAACGCGTGA AATCCGCGCT GGTCGCGACC
GCGATCGCCG AGCATTTCCG CGATGCGGGC AAGCGCGTGC TGCTCCTGGT CGACTCGCTC
ACGCGCTTTG CCCGCGCGCA GCGCGAGGTC GGACTCGCGA GCGGTGAGCC GCCGACACGG
CGCAGCTTTC CGCCGTCGAC ATTTGCCGTA CTGCCGCGCC TGCTCGAACG CGCGGGGCAG
GGCGCGACGG GATCGATCAC CGCGCTGTAT ACGGTGCTCG TCGAAGGCGA TGAGGAATCC
GATCCGATTG CCGAGGAAGT GCGCTCGATC CTCGACGGCC ATATCGTGCT GTCGCGCAAG
ATCGCGCTCG CGAACCGCTA TCCGGCGATC GACGTGCTCG CGAGCCTGTC GCGCGTGATG
CCGCTCGTCG CGAGCCGCGC ACATCAGCAG TCGGCCGCGC GCGTGCGCGA GCTGATCGCG
AAGTATCAGG AAATCGAGCT GCTCGTGCAG ATCGGCGAGT ATCGCGAGGG CAGCGACCGG
CTCGGCGATC TCGCGCTGCG CGCGCGCGAT GCGATCGGTG CGTTCTGCGC GCAGGGCTCG
CACGAGGACG TGCGCTTCGA CGCGCTGCTC GCGAAGCTGA CGAAACTCGC GAACGACCAT
GTCTGA
 
Protein sequence
MNGPLDDPQS FGDGSDDDAA PFDRGRLVGD LDAGLAFFSP VSVQGRVNHA VGQILNATGI 
RARLGEICEL RTPNQPTLLA EVVGFSRQTT LLTPLGDVAG LSPETTVVPS GREHVFPVGE
ALFGRVLDGL GRPLDDRGPV TGAAWVSTQQ DPPNPLARKM IDTPFPTGVR VIDGLMTLGI
GQRVGIFAPS GVGKSTLLGM IARGAQADVN VIALVGERGR EVREFIEHSL SPEVRARSIV
VVSTSDRPAM ERVKSALVAT AIAEHFRDAG KRVLLLVDSL TRFARAQREV GLASGEPPTR
RSFPPSTFAV LPRLLERAGQ GATGSITALY TVLVEGDEES DPIAEEVRSI LDGHIVLSRK
IALANRYPAI DVLASLSRVM PLVASRAHQQ SAARVRELIA KYQEIELLVQ IGEYREGSDR
LGDLALRARD AIGAFCAQGS HEDVRFDALL AKLTKLANDH V