| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_4179 |
|---|
| Symbol | |
|---|
| ID | 4313074 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008391 |
|---|
| Strand | - |
|---|
| Start bp | 1099380 |
|---|
| End bp | 1100093 |
|---|
| Gene Length | 714 bp |
|---|
| Protein Length | 237 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 638152020 |
|---|
| Product | short chain dehydrogenase |
|---|
| Protein accession | YP_776066 |
|---|
| Protein GI | 115358928 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.0383999 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAACACG ACCTGACAGG CAAGGCAGTC GCGATCACCG GCGGATTCGG CCATCTCGGC
GTCGCCACGG CCGCATGGCT CGGCCAACGC GGCGCCCGCG TCGCGCTGAT CGGCCGCGGC
GCGGCGCCGG ACGCGCAGGC GTTGCCCGGC GTGCCGGCCG ATGCGCTGCG CATCGGCGGC
ATCGACCTCG TCGATCCGCA GGCGGCCGCG CGCGCGCTCG ACACCGTGAA TCGCGAATTC
GGCAGGGTCG ACGCGCTGCT GAACATCGCC GGTGCGTTCA CATGGCAGAC GATCGCCGAC
GGCGATGCAG CCACGTGGGA CCGCATGTAC GAACTGAACG TGAAGACGGC GCTGAACGCG
TCGAAGGCCG CGCTGCCGTA TCTGGCGGCG AGTCCGGCCG GCCGTATCGT CAACATCGGG
GCCGGCGCGG CGTTCAAGGC AGGCGCGGGC ATGGGCGCCT ATGCGGCGGC GAAGGCAGGC
GTCGCGCGGC TCACCGAGGC ACTGGCGGCG GAGTTGCTCG ATCGCGGCGT GACCGTGAAC
GCGCTGCTGC CGAGCATCAT CGACACGCCG CCGAACCGTG CGGACATGCC GGACGCGGAC
TTCTCGCGCT GGGTCCGGCC CGAACAGCTC GCGGCGACGA TCGGGTTCCT GCTGTCGGCC
GATGCGCAGG CGATTACCGG CGCCTCGATT CCGGTGAGTG GGCGCGTGGA GTAG
|
|---|
| Protein sequence | MEHDLTGKAV AITGGFGHLG VATAAWLGQR GARVALIGRG AAPDAQALPG VPADALRIGG
IDLVDPQAAA RALDTVNREF GRVDALLNIA GAFTWQTIAD GDAATWDRMY ELNVKTALNA
SKAALPYLAA SPAGRIVNIG AGAAFKAGAG MGAYAAAKAG VARLTEALAA ELLDRGVTVN
ALLPSIIDTP PNRADMPDAD FSRWVRPEQL AATIGFLLSA DAQAITGASI PVSGRVE
|
|---|
| |