| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_4126 |
|---|
| Symbol | |
|---|
| ID | 4313021 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008391 |
|---|
| Strand | - |
|---|
| Start bp | 1045854 |
|---|
| End bp | 1046972 |
|---|
| Gene Length | 1119 bp |
|---|
| Protein Length | 372 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 638151967 |
|---|
| Product | porin |
|---|
| Protein accession | YP_776013 |
|---|
| Protein GI | 115358875 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3203] Outer membrane protein (porin) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.464673 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.0244727 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACAAGA CTCTGATCGT TGCAGCAGCT GCAGCATCGT TCGCTACCGT CGCTCACGCG
CAAAGCAGCG TCACGCTGTA CGGCGTGCTG GACGCAGGCA TCACCTACAC GAGCAACGTC
CAGCCGGCAC TCGGCCAAGC TGGCAAGTCG CGTTGGGCGA TGGGTTCGGG CATTGACCAG
AGCCGTTTCG GCCTGCGTGG CTCGGAAGAC CTGGGTGGCG GCCTGAAGGC AATCTTCACG
TTGGAAAGCG GCTTCGGCAT CGGTAACGGC AAGCTGGGCA ACAACGGCGG CATGTTCAAC
CGTCAAGCAT TTGTCGGTCT GTCGAGCCAG TACGGCACGG TCACGCTGGG TAAGCAGTAT
GACGCAACGC AAGACTACCT GGCGCCGCTG ACGGCAACGG GCTCGTGGGG CGGCACGTAC
TTCGCGCACC CGCTGAACCT CGACCGTCTG AGCACGACCG GTGACGTCGC AGCGAACAAC
ACCATCAAGT TCACGAGCGC GAACTACGCT GGCCTGCAAT TCGGCGGCAC GTACTCGTTC
TCGAACAACA CGAACTTCGG TAACAACCGT GCGTACAGCG CAGGCGTTGC ATACCAGTTC
CAAGGCCTGA AGCTGGCGGG TGCATACTCG CAAGCGAACC TGGGTGACGG TACGAACGCA
AACGGCGCGA CGTCGTCGGC AATCGGTGGC GTTGCTAGCC AAGGCCGCGT CCGCACGTAC
GGTGCTGCTG CTGGTTACGC ATTCGGCCCG GCACAAGTCG GCGCTGCATG GACGCAAGCA
CGTCTCGACA ACAACGCAGT TGGTCTGGGC ACGCTGCGCA CCGACAACTA CGAAGTCAAC
GCAAAGTACA ACCTGACGCC GGCTCTCGGC CTGGGTGCTG CTTACACGTA CACGAACGCG
AAGATCAACA ACGGCAGCAC GCACTGGAAC CAGTTCGGCC TGCAAGCTGA CTACTCGCTG
TCGAAGCGCA CGGACGTCTA CGCACAAGCT GTGTACCAGC GTGCAGCGAA GAACGGCATT
GGCGCATCGA TCTACAACGG CGACAGCTTC AGCAACAACC TGCCGAGCTC GTCGATCAAC
CAAACCGCAG CAACGGTTGG TCTGCGTCAC CGCTTCTAA
|
|---|
| Protein sequence | MNKTLIVAAA AASFATVAHA QSSVTLYGVL DAGITYTSNV QPALGQAGKS RWAMGSGIDQ
SRFGLRGSED LGGGLKAIFT LESGFGIGNG KLGNNGGMFN RQAFVGLSSQ YGTVTLGKQY
DATQDYLAPL TATGSWGGTY FAHPLNLDRL STTGDVAANN TIKFTSANYA GLQFGGTYSF
SNNTNFGNNR AYSAGVAYQF QGLKLAGAYS QANLGDGTNA NGATSSAIGG VASQGRVRTY
GAAAGYAFGP AQVGAAWTQA RLDNNAVGLG TLRTDNYEVN AKYNLTPALG LGAAYTYTNA
KINNGSTHWN QFGLQADYSL SKRTDVYAQA VYQRAAKNGI GASIYNGDSF SNNLPSSSIN
QTAATVGLRH RF
|
|---|
| |