| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_4118 |
|---|
| Symbol | |
|---|
| ID | 4313013 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008391 |
|---|
| Strand | + |
|---|
| Start bp | 1040235 |
|---|
| End bp | 1040876 |
|---|
| Gene Length | 642 bp |
|---|
| Protein Length | 213 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 638151959 |
|---|
| Product | autoinducer synthesis protein |
|---|
| Protein accession | YP_776005 |
|---|
| Protein GI | 115358867 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3916] N-acyl-L-homoserine lactone synthetase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0000553872 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.00840845 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCGTGCAT ACAAAGATCA ATCCGAGGAC ACCATGCGAA CCTTCGTTCA CGAGGAAGGG
CGGTTGCCGC ACGAACTTGC AGCGGATTTA GGGCGCTATC GGCGCCGTGT ATTCGTCGAA
CAGCTCGGTT GGGCGCTTCC GTCGGCGAAC GAGAGTTTCG AGCGCGATCA GTTCGATCGC
GACGATACCG TCTACGTGTT CGCGAGAAAC GCCGGCGGCG ACGTGTGCGG ATGTGCGCGC
CTGTTGCCGA CCACCCGCCC GTATCTGCTG AAGTCGCTGT TCGCCGACCT GGTCGCCGAA
GACGTCCCGC TGCCGCAATC GGCTGCCGTC TGGGAGCTGT CGCGGTTCGC GGCGACCGGC
GACGAAGGCG GTCCGGGCAA TGCCGAGTGG GCCGTCCGCC CGATGCTCGC CGCGGTCGTC
GAATGCGCGG CGCAGTTGGG CGCGCGGCAG CTGATCGGCG TGACGTTCGC GAGCATGGAG
CGGCTGTTCC GCCGGATCGG CGTGCACGCG CACCGGGCAG GGCCGCCGAA GCAGGTGGAC
GGTCGTCTGG TTGTCGCGTG CTGGATCGAC ATCGATCCGC AAACGTTTGC TGCACTTGGA
ATCGAGCCGG GACGGGCCGC CCGGCAAGCC ATCGCCGCCT GA
|
|---|
| Protein sequence | MRAYKDQSED TMRTFVHEEG RLPHELAADL GRYRRRVFVE QLGWALPSAN ESFERDQFDR
DDTVYVFARN AGGDVCGCAR LLPTTRPYLL KSLFADLVAE DVPLPQSAAV WELSRFAATG
DEGGPGNAEW AVRPMLAAVV ECAAQLGARQ LIGVTFASME RLFRRIGVHA HRAGPPKQVD
GRLVVACWID IDPQTFAALG IEPGRAARQA IAA
|
|---|
| |