| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_3981 |
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| Symbol | |
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| ID | 4312877 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008391 |
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| Strand | + |
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| Start bp | 888847 |
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| End bp | 891084 |
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| Gene Length | 2238 bp |
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| Protein Length | 745 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 638151823 |
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| Product | penicillin-binding protein 1C |
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| Protein accession | YP_775869 |
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| Protein GI | 115358731 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4953] Membrane carboxypeptidase/penicillin-binding protein PbpC |
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| TIGRFAM ID | [TIGR02073] penicillin-binding protein 1C |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.187688 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCGATC TGGTTTTGCC GCGGCCGGCG CGTTTCGCCG GCCGCGTATT CGTCGCCGTC
GTGCTGGCCG CGCCGCTCGT CGCGCACGCG CTGCCCGGCT ACGACGACGT GCGGCGCGGC
TGGCGCAGTT CCGACTGGGT GCTGCTCGCG CGCGACGGCA CGCCGTTGCA GCGCACGCGC
GTCGATCTCA CCGAACGGCG CGGCGACTGG GTGTCGCTCG CCGACGTGTC GCCCGCGTTC
CGCGAGGCGA TCGTCGTGTC GGAAGACAAA CGTTTCTACG AACACAGCGG CGTCGACTGG
CGCGGCATCG CCGGTGCGGC GTGGGGCAAC CTGTGGAACG AGCGCACGCG CGGCGCGTCG
ACCGTGACGA TGCAGCTCGC CGGGCTGCTC AGCGATTCGC CGCGCCGCTC GGGCCAGCGC
TCGCTGCCGC AGAAGGCCAC CCAGGCGATG AACGCGCTGC TGCTCGAGCG CGGCTGGCGC
AAGGACCAGA TCCTCGAGGC CTATCTGAAT CTCGTGCCGT TTCGCGGCGA GACGGTCGGG
CTCGCCGCGC TGTCGCAGGT GCTGTTCGGC AAGGCGCCGT CCGGTCTCGA CGCACGCGAA
GCCGCGATCG CCGCGGCGCT GGTGCGCGCG CCGAACGCGT CGCCCGCGAA GGTCGCCGAG
CGGGCCTGCC GGATCCTGCG CGACATGCAT GCGGAACAGG GCTGCGCGTC GCTCGACGGC
TACGTGCAGC TCGTGATCGC ACGCCCGGCC AATGCCGTGC GGGACGACAG CGCCGCCCTC
GCCCCGCACT TCGCGCGCCG CATCGCGGCC GAGGTCCGAC CCGCGGCCGG CGCGCAGGTG
CGCACGACGC TCGACGCGCC GCTGCAGCGC TTCGCGCGCG ACACGCTGAC GCGCGCACTG
ACCGAGCTCA ACGCGCCCGC GCACCGGCGC AACGTGCAGG ACGGCGCGGT CGTCGTGATC
GACAACGCGA CCGGCGAGAT TCGCGCGTGG GTCGGTTCGT CGGGGGCGTT GTCGAGCGCA
CGCGACGTCG ACGCGGTGCT CGCGCCGCGC CAGGCCGGCT CGACGCTCAA GCCGTTCCTC
TACGCGCAGG CGATCGACGA GAAGCGGCTG ACGGCCGCGT CGCTGCTCGA CGACGCGCCG
ATCAACCTCG CGGCCGGCGG CGGCCTCTAT ATTCCGCAGA ACTACGACAA GGATTTCAAG
GGCTGGGTGA GCGTGCGCAC CGCGCTCGGC GGCTCGCTGA ACGTGCCGGC CGTGCGCACG
CTCGTGCTCG TCACGCCGCA CCGCTTCGCG CGCACGCTGA CCGCGCTCGG CCTGCCGCTC
GCGCAGGAAG GCGATTACTA CGGCTTCAGC CTTGCGCTCG GCAGCGCGGA CGTCACGCTG
CTGTCGCTGA CCAATGCGTA TCGCGCGCTC GCGAACGGTG GCGTCGCGCG CCAGGTCGTC
GACCTGCCGG CGCCGGCGCC TGCTTCCGGC GCGTCGACAC CGGGCCATGC GGACAACGGC
ACGCGCGTGT TCAGCGAAGC GGCCAGCTTC GTCGTCACCG ACATCCTCTC CGACAACAAC
GCACGGGTGC GCACGTTCGG CTTCGACAAC CCGCTCGCGA CGCGCTTCTT CTCGGCGGTC
AAGACCGGCA CGAGCAAGGA CATGCGCGAC AACTGGACCG TCGGCTTCAC GTCGCGGTAT
ACGGTCGGCG TGTGGGTCGG CAACGCGGAC GGTTCACCGA TGTGGGACGT GTCGGGGGTG
ACGGGCGCGT CGCCGGTGTG GTCGGCCGTC GTCAGCTACC TGCACCGCGA CCTGCCGAGC
CGTGCGCCGA AAGCGCCGGC CGGTGTCGAA ACGCGCCGCA TCGCGTTCGA GCGCGACGTC
GAGCCGTCGC GCAACGAGTG GTTCGTCCCG GGCACGGCCC TCGACACGAT CCGGCTCGCC
GCACCCGTCA CGCCGGGCAA GGACAGCGCG CGCGCGCCGC TGGCGATCGG CGCGCCGACC
GACGGCACGA TCTTCGCGAT CGATCCGGAC ATTCCGCCGA AGAACCAGCG GATCTGGTTC
GAGCGGTCGT CCGGGCATGC CGCGCGCTTC GCATGGCGGC TCGACGACAA GGTAATCGGG
CACGCCGACC GCATCGCGTG GATGCCGTGG CCGGGCCGGC ACCGGCTGGA ACTCGTCGAC
GCGCGCGGCA ACGTCGCGGA TGCGATCGGC TTCGAGGTGC GCGGCGCGTT CGCGAAGCCG
GCCGCGCGCA AGCCCTGA
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| Protein sequence | MIDLVLPRPA RFAGRVFVAV VLAAPLVAHA LPGYDDVRRG WRSSDWVLLA RDGTPLQRTR
VDLTERRGDW VSLADVSPAF REAIVVSEDK RFYEHSGVDW RGIAGAAWGN LWNERTRGAS
TVTMQLAGLL SDSPRRSGQR SLPQKATQAM NALLLERGWR KDQILEAYLN LVPFRGETVG
LAALSQVLFG KAPSGLDARE AAIAAALVRA PNASPAKVAE RACRILRDMH AEQGCASLDG
YVQLVIARPA NAVRDDSAAL APHFARRIAA EVRPAAGAQV RTTLDAPLQR FARDTLTRAL
TELNAPAHRR NVQDGAVVVI DNATGEIRAW VGSSGALSSA RDVDAVLAPR QAGSTLKPFL
YAQAIDEKRL TAASLLDDAP INLAAGGGLY IPQNYDKDFK GWVSVRTALG GSLNVPAVRT
LVLVTPHRFA RTLTALGLPL AQEGDYYGFS LALGSADVTL LSLTNAYRAL ANGGVARQVV
DLPAPAPASG ASTPGHADNG TRVFSEAASF VVTDILSDNN ARVRTFGFDN PLATRFFSAV
KTGTSKDMRD NWTVGFTSRY TVGVWVGNAD GSPMWDVSGV TGASPVWSAV VSYLHRDLPS
RAPKAPAGVE TRRIAFERDV EPSRNEWFVP GTALDTIRLA APVTPGKDSA RAPLAIGAPT
DGTIFAIDPD IPPKNQRIWF ERSSGHAARF AWRLDDKVIG HADRIAWMPW PGRHRLELVD
ARGNVADAIG FEVRGAFAKP AARKP
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