Gene Bamb_3980 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_3980 
Symbol 
ID4312876 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008391 
Strand
Start bp882798 
End bp888839 
Gene Length6042 bp 
Protein Length2013 aa 
Translation table11 
GC content70% 
IMG OID638151822 
Productalpha-2-macroglobulin domain-containing protein 
Protein accessionYP_775868 
Protein GI115358730 
COG category[R] General function prediction only 
COG ID[COG2373] Large extracellular alpha-helical protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0975356 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGCAGC ACAATAAACA CAACAACACG CATCAATCCA ATCACACCAC ACGGCTGCTC 
TGGCGCATCG GCGCGATCGC GGCGCTCGGC GCCGCCGCGG CACTGCCGCT GCATGCGCTC
GCGGCGCGCA CGGTGAGCGT GTCGCCGCAA GGCACGGTCA CCGAAGTCCG GCAAAGCGTC
GTCAAGTTCG ACGAGCCGAT GGTCGCGTTC GGCTCGGCGT CCGCGCCGAA CCCCGCGCGC
ATGACCTGCA ACGATTCCAC CGCCGCGCGC GGCCAGGGTC ACTGGCTCGA CGACAAAACG
TGGGTCTACG ATTTCGAGAA CGACCTGCCG CCAGGCGTGC GTTGCTCGGT CGCGCTCAAC
GACACGCTGC GCTCGGTCGC CGGCAATGCC GTGAGCGGCC CGCGCCGCTT CACGTTTCAA
ACCGGCGGCC CGTTCCCGGT GACGGTGCGC CCCGGCTCGC GCGAGATCGA GGAGCGCCAG
GTCTTCGTGC TGAAGCTGAA CGGCCCGGCC GAGCCGCGTT CCGCGCTCGC GAACATCTGG
TGCGAGGCGG CCGGCATCGG CAACCGCATC CCCGTCACGG CCGCCGACGA CGCTACCCGC
AACGCGCTGC TCGACCATTT CGGGCTGAAG AAGGACGCCG CGCGCGTGCT GACGCTGTCG
TGCGCGCAGG CGCTGCCCGC GAGCGCAAAG ATGCAGCTCG TCTACGGCAA GGGCGTCGCG
AGCCCGAGCG GCATCGCGAA CGACACCGAG CGCCGCTTCG ACTTCACGGT GCGCGCCCCG
TTCACCGCGA GCTTCTCGTG CGAACGCGAG AACGCGAAGG CGCCCTGCAC GCCGCTGCGC
CCGCTGACGC TGTCGTTCAA CGCGCCGATC TCGCGCAAGA ACGCCGAGGC GATCAAGCTG
CGCGGTCCTG ACGGTTCGCT TTCACCGACC TTCGGGGCCG ACGACCACAG CGACGAAGTG
ACCACCGTCA CGTTCAACCC GCCGCTGCCC GCGCAGGCGA ACCTGACGAT CGAGCTGCCG
TCCGGCCTGC GCGACGTGAC CGACCGCTCG CTCGCGAACG CCGACCTGTT CCCGCTCGCG
ACGCGCACCG CGCCGATGCC GCCGCTCGCG AAATTCTCGT CGGGCACCTT CGGGATCGTC
GAGCGTTTCG CCGAACCCGA TACGCCGGCG CTCGTGCCGG TCACGCTGCG CAACGTGGAG
GCCGACCTGC ATATCGCGGG CCTCAACACG CGCGGCGCGC AATTCTCGAA CCTGAAGGTC
GACGACGACA CCACGATCCG CCAATGGATG CGCACCGTCG AGCGCTTCGA CAACTGGGCG
ATGACGGCCG GCACGATCGA CGAGCGCGTG CCGGGCCTGC TCCGGCGCAC GGGCCAGCAC
CCCGTCTACG TACCGCTCGG GGCCGGTGAA AAGATGCCCG CGCCGCAGAA TCGCCGCATC
GACGTGCGCT CGCTGTCGCT GCTCACCGGC GAGCCGGGGG CGCAGGCGAT GACACTGCCG
AAGGCCGATC CGAAGGCGCT GCGTCCGTTC GAGGTCGTCG GCGTGCCGAT CGACAAGCCC
GGTTTCTACG TGCTCGAACT CGCGTCGCCC GCGCTCGGCC GCTCGCTGCT CGCGAAGCCG
TCGAGCATGT ACGTGCGCAC CACCGTGCTC GTCACGAACC TCGGCGTGCA TCTGAAACAG
GGCCGCGAGA ACAACCTCGT GTGGGTCACG ACGCTCGACA AGGGCAAGCC GGTGCCGAAC
GCGCGGATCC GCGTGTCGGA CTGCAACGGC GACGAGATCG CGACCGGCAA GACCGATGCG
CAAGGCCTGC TGAAGATCGA CGGTCAATTC GAGCCGAAGC ACGAATGCAG CCAGTCGGAA
CGCTTCGACG ACTACTTCGT GTCGGCGCGC GTGGACGATC CGAAGACGGG CCCCGACATG
GCGTTCGTCA GCTCGAACTG GAACCGCGGG ATCGAATCGT GGCGCTTCAA CGTGCCGACC
GACACCGGCA GCGAACCGAC CGTGCGTGCG CATACCGTGT TCGACCGCAC GCTCCTGCGT
GCCGGCGAAA CCGTTTCGAT GAAGCACTTC CTGCGCACCG AGACGCTGCA GACCCTCGCG
TTCCCGGCGC AATACCCGAC GCGCGTGAAG ATCCGCCATC TCGGCTCCGA CCAGACCTAC
AAGCTGCCGC TCACGTGGTC GGCCGACCAC AGCGCGGATA CGCAATTCCC GCTGCCGCCC
GCGGCCAAGC TCGGCGAATA CAGCGTCACG CTCGAAGGCG GCCCGGACGA TGCGCCGACC
ACCAGCTACT ACAGCGGCAG CTTCCGCGTC GAAGCGTTCC GCCTGCCGGT GCTCAAGGGG
TCGATCGGCG CGCGCGACGC GCAGAAGAGC CCGCTCGTCG CCGTGAAGGA AGCGCCGCTC
GCGGTGCAGA TCGACTACGT GTCGGGCGGC GGCGCATCGA ACCTGCCGGT GCAGGTGTCG
GCGCTGATGA AGTGGGCGTC GCCGCCGTTC GCGGATCGCT TCGAGGACTT CAGCTTCACG
CCGTATCGTC CGGAGCGCAG CGACGGCAAC GCCGACGACG ATGCGCAGGA CGGCGACAAC
GCGTCGGCCG CGAACAACGA TCCCGACGCG ACCAAGCTGA TCGCGGACAA GCTGCCGCTG
ACGCTCGACC GAAACGGTGC GGGCTCGGTC ACGCTGAAGG GCCTGCCCGA CGTCGACGCG
CCGAAGCGCA TCGCGCTCGA GGCGACCTTC GCGGACCCGA ACGGCGAAGT GCAGACGATC
CGCGGCGACA CGATCCTGTG GCCGGCCGCG GTGGTAGCCG GCATCAAGGC CGGCCGCTGG
GTGTCGGTCG GCCAGCGCGT GCCGGTGCAG GCGCTCGCGG TCGACCTGCA GGGCAAGCCG
CGTGCGTCGG TGTCGATCGA GATCAAGGGC GTCGCGCACG TCACGACGTC GTCGCGCAAG
CGAATGGTCG GCGGCTTCTA CGCGTACGAC AACAAGAGCG ACACGCGCGA CCTCGGCGTG
CTGTGCTCGG GCAAGACCGA CGACAAGGGC CGCATGGCCT GCGACGCGAC GCTCGAACAG
GCCGGCAACG TCCAGTTGAT CGCGGTCGCG AAGGACGGCG ACGGCCGCAC GTCGAACGCG
TCGACGTCCG TGTGGGTCAC GCGCGAGGAC GAACTGTGGT TCGGCGGCGA TAACACCGAC
CGGATCGACG TGATTCCGGA GAAGACGTCC TACGAGCCGG GCGAAACGGC CCGCTTCCAG
GTGCGCATGC CGTTCCGCTA CGCCACGGCG CTGGTCGCGG TCGAACGCGG CGGCGTGATG
GAAACGCACA TCGTCGAACT GACCGGCAAG AATCCGACCG TCGACCTGAA GGTCGGCGAA
TCGTGGGGGC CGAACGTCTA CGTGTCGGTG CTCGCGCTGC GCGGCCGGAT TCGCGAGGTG
CCGTGGTACT CGTTCTTCAC GTGGGGCTGG AAGGCGCCGG TCGAATGGGC GCGCGCGTTC
TGGCGCGAAG GCCGTCACCA TGAAGCGCCG ACCGCGTTCG TCGACCTGTC GAAGCCCGCG
TTCCGCTACG GCCTCGGCGA GATCAAGGTC GGCACCGGCG TGCATCGTCT CGGCGTGACC
GTGACGACCG ACGCGACGCG CTACACGGTG CGCGGCAAGG CGCAGGCGCA CGTGAAGGTC
ACGCTGCCGA ACGGCCAGCC CGCGCCTGCC GGCACGCAGA TCGCGGTCGC GGCCGTCGAC
GAGGCGCTGC TCGAACTGAT GCCGAACAAC AGCTGGGACC TGCTCGACGC GATGCTGCAG
CGACGCGCGT ACGGCGTCGA GACGGCCACC GCGCAGATGG AAATCGTCGG CCGCCGCCAC
TTCGGCCGCA AGGCCGTGCC GGCCGGTGGC GGCGGCGGCA GCGCGCCGAC GCGCGAGCTG
TTCGACACGC TGCTGCTGTG GAATCCGCGC GTGACGCTCG ACGCGAACGG CAGCGCAAAC
GTCGAGGTGC CGCTGAACGA CGCGCTCACG CGCTTCCGGA TCGTCGCCGT CGCGGCGGTC
GGCCCGGACC GCTTCGGCAC CGGCAGCACG TCGATCCGTA GCACGCAGGA TCTGCAACTG
ATCTCCGGCC TGCCGCCGCT CGTGCGCGAA GGCGATGCGT TCCGCGCGCA GGTCACGCTG
CGCAACACGA CCGACCGCGC GATGCAGGTG GTCGTGACGC CGCGCGTGAC GGGGCTCGAC
GTCGCGCCGC AAACCGTGTC GCTCGCGGCC AACGCGGCGA CCGAGGTCGC GTGGACGATC
ACCGTGCCCG AGCAGGCGCT CGACGCGGCC GGCGCGCTGA ACTGGCGGAT CGAAGCGGCC
GAGCAAGGCG GCAAGCGCGC GTCCGATGCG CTGGCCGTCG CGCAGAAGGT CGTGCCCGCC
CTGCCGGTGA CCGTGCAGCA GGCCACGCTC ACGCAGGTCG ACGGCACGCT GACGTTGCCC
GTGGCGGCCC CGGCCGGCGC CGTCAACAAC GCGCAGGGCG CGCCGCGCGG CGGCATCGCC
GTGTCGCTGC AGTCGAAGCT CGCGGACGGC CTGCCCGGCG TGCGGCGCTG GTTCGAGCGC
TATCCGTACC GCTGTCTCGA ACAGCAGACG TCGCGTGCGA TCGGCCTGCA CGACGCCGCG
CAATGGCAGG CGCTGGTGGC ACGGATGCCC GTCTACCTCG ACAGCGACGG GCTCGCGAGC
TATTTCCCGC CGTCGTCCGA CGATGCGCAC TACGGCAGCC CGACGCTGTC GTCGTACCTG
CTCGTGGTCG CCGACGAAGC CGGCCGCCTC GACCCGCGCT TCGCGCTGCC GGAAGACCTG
CGCACGCAGC TCGAAGCCGG GCTCGCACGC TTCATCGACG GCCGCATCGA GCGCAACGCA
TGGGCGCCGC GCCAGGATCG CGACCTGCGC AAGCTGGCCG CGATCGAGGC GCTGTCGCGT
TACGGTGCCG CGCAAGGCCG CATGCTCGGC TCGATCGAGA TCGCGCCGAA CCAATGGCCG
ACGTCGGCGC TGATCGACTA TCACGCGATC CTCACGCGCG TGAAGGACAT CCCGCAGCGC
GACGAGAAAC GTGCGCAGGT CGAGCAGATC CTGCGCGCGC GCCTCACGTA CCAGGGCACG
CAGCTCGTGT TCTCGACCGC GCGCGACGAC GACCTGTGGT GGCTGATGAC GAGCAACGAG
ACCAACGCCG CACGCCTCGC GCTGGAATTC GCGGGCGACC CGGCGTGGAA GGACGAGATG
CCGCGCGTGA CGGCCGGCCT GCTCGCGCTG CAACGTCAGG GCGCATGGCA GACGACGACG
TCGAACGCAC TCGGCCAACT GGCGGTCGAG CGCTTCTCGC GCACCTACGA GAGCGTGCCG
GTGGCCGGCA CGACGAAGGT CGCGCTCGGC GGCAACGAGC GTGCGATCGC GTGGTCGCAG
GCAGGCTCGG CCGCGCCCGC CGAGTCGCCC GCGTCGGCCA CGCCCGCGAC CCGCGCCTCC
ACCGAACGCA GCGTGCTGAT GCCGTGGCCG CGTGCGTCGC AGGCGCCGGC CACGCTGTCC
GTCACCCAGG ATGGCACGGG CCGCCCGTGG GCAACGGTCG AAAGCCTCGC GGCCGTGCCG
CTGCGCACGC CGTTCGCGGC CGGCTACCGG ATCACGAAGA CCGTCACGCC CGTGTCGCCC
GCCGTCAAGG GCGTGCTGAC GCGCGGCGAC GTCGTGCGCG TGCATCTCGA CATCGACGCG
CAGAGCGACA TGACGTGGGT CGTCGTCAAC GATCCGATTC CGTCCGGCGC GACGATTCTC
GGCTCGGGCC TCGGCCGCGA CTCCGAGGCC GCGACGCAGG GCGAGAAATC CCCGGACGGC
GCATGGCCGG CGTTCATCGA ACGCGACTTC GACGGCTACC GCGCGTATTA CGACTATCTG
CCGAAGGGCA AACTCTCGGT CGAGTACACG GTGCGGCTGA ACAACGTCGG CACCTTCGGG
CTGCCGCCGA CGCGCGTCGA GGCGCTGTAC GCGCCGTCCG TGTATGGCCT GTGGCCGAAC
CCGCCGATGA CCGTGAAGCC GGCCGACGCG GGCAAGTCGT GA
 
Protein sequence
MKQHNKHNNT HQSNHTTRLL WRIGAIAALG AAAALPLHAL AARTVSVSPQ GTVTEVRQSV 
VKFDEPMVAF GSASAPNPAR MTCNDSTAAR GQGHWLDDKT WVYDFENDLP PGVRCSVALN
DTLRSVAGNA VSGPRRFTFQ TGGPFPVTVR PGSREIEERQ VFVLKLNGPA EPRSALANIW
CEAAGIGNRI PVTAADDATR NALLDHFGLK KDAARVLTLS CAQALPASAK MQLVYGKGVA
SPSGIANDTE RRFDFTVRAP FTASFSCERE NAKAPCTPLR PLTLSFNAPI SRKNAEAIKL
RGPDGSLSPT FGADDHSDEV TTVTFNPPLP AQANLTIELP SGLRDVTDRS LANADLFPLA
TRTAPMPPLA KFSSGTFGIV ERFAEPDTPA LVPVTLRNVE ADLHIAGLNT RGAQFSNLKV
DDDTTIRQWM RTVERFDNWA MTAGTIDERV PGLLRRTGQH PVYVPLGAGE KMPAPQNRRI
DVRSLSLLTG EPGAQAMTLP KADPKALRPF EVVGVPIDKP GFYVLELASP ALGRSLLAKP
SSMYVRTTVL VTNLGVHLKQ GRENNLVWVT TLDKGKPVPN ARIRVSDCNG DEIATGKTDA
QGLLKIDGQF EPKHECSQSE RFDDYFVSAR VDDPKTGPDM AFVSSNWNRG IESWRFNVPT
DTGSEPTVRA HTVFDRTLLR AGETVSMKHF LRTETLQTLA FPAQYPTRVK IRHLGSDQTY
KLPLTWSADH SADTQFPLPP AAKLGEYSVT LEGGPDDAPT TSYYSGSFRV EAFRLPVLKG
SIGARDAQKS PLVAVKEAPL AVQIDYVSGG GASNLPVQVS ALMKWASPPF ADRFEDFSFT
PYRPERSDGN ADDDAQDGDN ASAANNDPDA TKLIADKLPL TLDRNGAGSV TLKGLPDVDA
PKRIALEATF ADPNGEVQTI RGDTILWPAA VVAGIKAGRW VSVGQRVPVQ ALAVDLQGKP
RASVSIEIKG VAHVTTSSRK RMVGGFYAYD NKSDTRDLGV LCSGKTDDKG RMACDATLEQ
AGNVQLIAVA KDGDGRTSNA STSVWVTRED ELWFGGDNTD RIDVIPEKTS YEPGETARFQ
VRMPFRYATA LVAVERGGVM ETHIVELTGK NPTVDLKVGE SWGPNVYVSV LALRGRIREV
PWYSFFTWGW KAPVEWARAF WREGRHHEAP TAFVDLSKPA FRYGLGEIKV GTGVHRLGVT
VTTDATRYTV RGKAQAHVKV TLPNGQPAPA GTQIAVAAVD EALLELMPNN SWDLLDAMLQ
RRAYGVETAT AQMEIVGRRH FGRKAVPAGG GGGSAPTREL FDTLLLWNPR VTLDANGSAN
VEVPLNDALT RFRIVAVAAV GPDRFGTGST SIRSTQDLQL ISGLPPLVRE GDAFRAQVTL
RNTTDRAMQV VVTPRVTGLD VAPQTVSLAA NAATEVAWTI TVPEQALDAA GALNWRIEAA
EQGGKRASDA LAVAQKVVPA LPVTVQQATL TQVDGTLTLP VAAPAGAVNN AQGAPRGGIA
VSLQSKLADG LPGVRRWFER YPYRCLEQQT SRAIGLHDAA QWQALVARMP VYLDSDGLAS
YFPPSSDDAH YGSPTLSSYL LVVADEAGRL DPRFALPEDL RTQLEAGLAR FIDGRIERNA
WAPRQDRDLR KLAAIEALSR YGAAQGRMLG SIEIAPNQWP TSALIDYHAI LTRVKDIPQR
DEKRAQVEQI LRARLTYQGT QLVFSTARDD DLWWLMTSNE TNAARLALEF AGDPAWKDEM
PRVTAGLLAL QRQGAWQTTT SNALGQLAVE RFSRTYESVP VAGTTKVALG GNERAIAWSQ
AGSAAPAESP ASATPATRAS TERSVLMPWP RASQAPATLS VTQDGTGRPW ATVESLAAVP
LRTPFAAGYR ITKTVTPVSP AVKGVLTRGD VVRVHLDIDA QSDMTWVVVN DPIPSGATIL
GSGLGRDSEA ATQGEKSPDG AWPAFIERDF DGYRAYYDYL PKGKLSVEYT VRLNNVGTFG
LPPTRVEALY APSVYGLWPN PPMTVKPADA GKS