Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bamb_3980 |
Symbol | |
ID | 4312876 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria AMMD |
Kingdom | Bacteria |
Replicon accession | NC_008391 |
Strand | + |
Start bp | 882798 |
End bp | 888839 |
Gene Length | 6042 bp |
Protein Length | 2013 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 638151822 |
Product | alpha-2-macroglobulin domain-containing protein |
Protein accession | YP_775868 |
Protein GI | 115358730 |
COG category | [R] General function prediction only |
COG ID | [COG2373] Large extracellular alpha-helical protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.0975356 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGCAGC ACAATAAACA CAACAACACG CATCAATCCA ATCACACCAC ACGGCTGCTC TGGCGCATCG GCGCGATCGC GGCGCTCGGC GCCGCCGCGG CACTGCCGCT GCATGCGCTC GCGGCGCGCA CGGTGAGCGT GTCGCCGCAA GGCACGGTCA CCGAAGTCCG GCAAAGCGTC GTCAAGTTCG ACGAGCCGAT GGTCGCGTTC GGCTCGGCGT CCGCGCCGAA CCCCGCGCGC ATGACCTGCA ACGATTCCAC CGCCGCGCGC GGCCAGGGTC ACTGGCTCGA CGACAAAACG TGGGTCTACG ATTTCGAGAA CGACCTGCCG CCAGGCGTGC GTTGCTCGGT CGCGCTCAAC GACACGCTGC GCTCGGTCGC CGGCAATGCC GTGAGCGGCC CGCGCCGCTT CACGTTTCAA ACCGGCGGCC CGTTCCCGGT GACGGTGCGC CCCGGCTCGC GCGAGATCGA GGAGCGCCAG GTCTTCGTGC TGAAGCTGAA CGGCCCGGCC GAGCCGCGTT CCGCGCTCGC GAACATCTGG TGCGAGGCGG CCGGCATCGG CAACCGCATC CCCGTCACGG CCGCCGACGA CGCTACCCGC AACGCGCTGC TCGACCATTT CGGGCTGAAG AAGGACGCCG CGCGCGTGCT GACGCTGTCG TGCGCGCAGG CGCTGCCCGC GAGCGCAAAG ATGCAGCTCG TCTACGGCAA GGGCGTCGCG AGCCCGAGCG GCATCGCGAA CGACACCGAG CGCCGCTTCG ACTTCACGGT GCGCGCCCCG TTCACCGCGA GCTTCTCGTG CGAACGCGAG AACGCGAAGG CGCCCTGCAC GCCGCTGCGC CCGCTGACGC TGTCGTTCAA CGCGCCGATC TCGCGCAAGA ACGCCGAGGC GATCAAGCTG CGCGGTCCTG ACGGTTCGCT TTCACCGACC TTCGGGGCCG ACGACCACAG CGACGAAGTG ACCACCGTCA CGTTCAACCC GCCGCTGCCC GCGCAGGCGA ACCTGACGAT CGAGCTGCCG TCCGGCCTGC GCGACGTGAC CGACCGCTCG CTCGCGAACG CCGACCTGTT CCCGCTCGCG ACGCGCACCG CGCCGATGCC GCCGCTCGCG AAATTCTCGT CGGGCACCTT CGGGATCGTC GAGCGTTTCG CCGAACCCGA TACGCCGGCG CTCGTGCCGG TCACGCTGCG CAACGTGGAG GCCGACCTGC ATATCGCGGG CCTCAACACG CGCGGCGCGC AATTCTCGAA CCTGAAGGTC GACGACGACA CCACGATCCG CCAATGGATG CGCACCGTCG AGCGCTTCGA CAACTGGGCG ATGACGGCCG GCACGATCGA CGAGCGCGTG CCGGGCCTGC TCCGGCGCAC GGGCCAGCAC CCCGTCTACG TACCGCTCGG GGCCGGTGAA AAGATGCCCG CGCCGCAGAA TCGCCGCATC GACGTGCGCT CGCTGTCGCT GCTCACCGGC GAGCCGGGGG CGCAGGCGAT GACACTGCCG AAGGCCGATC CGAAGGCGCT GCGTCCGTTC GAGGTCGTCG GCGTGCCGAT CGACAAGCCC GGTTTCTACG TGCTCGAACT CGCGTCGCCC GCGCTCGGCC GCTCGCTGCT CGCGAAGCCG TCGAGCATGT ACGTGCGCAC CACCGTGCTC GTCACGAACC TCGGCGTGCA TCTGAAACAG GGCCGCGAGA ACAACCTCGT GTGGGTCACG ACGCTCGACA AGGGCAAGCC GGTGCCGAAC GCGCGGATCC GCGTGTCGGA CTGCAACGGC GACGAGATCG CGACCGGCAA GACCGATGCG CAAGGCCTGC TGAAGATCGA CGGTCAATTC GAGCCGAAGC ACGAATGCAG CCAGTCGGAA CGCTTCGACG ACTACTTCGT GTCGGCGCGC GTGGACGATC CGAAGACGGG CCCCGACATG GCGTTCGTCA GCTCGAACTG GAACCGCGGG ATCGAATCGT GGCGCTTCAA CGTGCCGACC GACACCGGCA GCGAACCGAC CGTGCGTGCG CATACCGTGT TCGACCGCAC GCTCCTGCGT GCCGGCGAAA CCGTTTCGAT GAAGCACTTC CTGCGCACCG AGACGCTGCA GACCCTCGCG TTCCCGGCGC AATACCCGAC GCGCGTGAAG ATCCGCCATC TCGGCTCCGA CCAGACCTAC AAGCTGCCGC TCACGTGGTC GGCCGACCAC AGCGCGGATA CGCAATTCCC GCTGCCGCCC GCGGCCAAGC TCGGCGAATA CAGCGTCACG CTCGAAGGCG GCCCGGACGA TGCGCCGACC ACCAGCTACT ACAGCGGCAG CTTCCGCGTC GAAGCGTTCC GCCTGCCGGT GCTCAAGGGG TCGATCGGCG CGCGCGACGC GCAGAAGAGC CCGCTCGTCG CCGTGAAGGA AGCGCCGCTC GCGGTGCAGA TCGACTACGT GTCGGGCGGC GGCGCATCGA ACCTGCCGGT GCAGGTGTCG GCGCTGATGA AGTGGGCGTC GCCGCCGTTC GCGGATCGCT TCGAGGACTT CAGCTTCACG CCGTATCGTC CGGAGCGCAG CGACGGCAAC GCCGACGACG ATGCGCAGGA CGGCGACAAC GCGTCGGCCG CGAACAACGA TCCCGACGCG ACCAAGCTGA TCGCGGACAA GCTGCCGCTG ACGCTCGACC GAAACGGTGC GGGCTCGGTC ACGCTGAAGG GCCTGCCCGA CGTCGACGCG CCGAAGCGCA TCGCGCTCGA GGCGACCTTC GCGGACCCGA ACGGCGAAGT GCAGACGATC CGCGGCGACA CGATCCTGTG GCCGGCCGCG GTGGTAGCCG GCATCAAGGC CGGCCGCTGG GTGTCGGTCG GCCAGCGCGT GCCGGTGCAG GCGCTCGCGG TCGACCTGCA GGGCAAGCCG CGTGCGTCGG TGTCGATCGA GATCAAGGGC GTCGCGCACG TCACGACGTC GTCGCGCAAG CGAATGGTCG GCGGCTTCTA CGCGTACGAC AACAAGAGCG ACACGCGCGA CCTCGGCGTG CTGTGCTCGG GCAAGACCGA CGACAAGGGC CGCATGGCCT GCGACGCGAC GCTCGAACAG GCCGGCAACG TCCAGTTGAT CGCGGTCGCG AAGGACGGCG ACGGCCGCAC GTCGAACGCG TCGACGTCCG TGTGGGTCAC GCGCGAGGAC GAACTGTGGT TCGGCGGCGA TAACACCGAC CGGATCGACG TGATTCCGGA GAAGACGTCC TACGAGCCGG GCGAAACGGC CCGCTTCCAG GTGCGCATGC CGTTCCGCTA CGCCACGGCG CTGGTCGCGG TCGAACGCGG CGGCGTGATG GAAACGCACA TCGTCGAACT GACCGGCAAG AATCCGACCG TCGACCTGAA GGTCGGCGAA TCGTGGGGGC CGAACGTCTA CGTGTCGGTG CTCGCGCTGC GCGGCCGGAT TCGCGAGGTG CCGTGGTACT CGTTCTTCAC GTGGGGCTGG AAGGCGCCGG TCGAATGGGC GCGCGCGTTC TGGCGCGAAG GCCGTCACCA TGAAGCGCCG ACCGCGTTCG TCGACCTGTC GAAGCCCGCG TTCCGCTACG GCCTCGGCGA GATCAAGGTC GGCACCGGCG TGCATCGTCT CGGCGTGACC GTGACGACCG ACGCGACGCG CTACACGGTG CGCGGCAAGG CGCAGGCGCA CGTGAAGGTC ACGCTGCCGA ACGGCCAGCC CGCGCCTGCC GGCACGCAGA TCGCGGTCGC GGCCGTCGAC GAGGCGCTGC TCGAACTGAT GCCGAACAAC AGCTGGGACC TGCTCGACGC GATGCTGCAG CGACGCGCGT ACGGCGTCGA GACGGCCACC GCGCAGATGG AAATCGTCGG CCGCCGCCAC TTCGGCCGCA AGGCCGTGCC GGCCGGTGGC GGCGGCGGCA GCGCGCCGAC GCGCGAGCTG TTCGACACGC TGCTGCTGTG GAATCCGCGC GTGACGCTCG ACGCGAACGG CAGCGCAAAC GTCGAGGTGC CGCTGAACGA CGCGCTCACG CGCTTCCGGA TCGTCGCCGT CGCGGCGGTC GGCCCGGACC GCTTCGGCAC CGGCAGCACG TCGATCCGTA GCACGCAGGA TCTGCAACTG ATCTCCGGCC TGCCGCCGCT CGTGCGCGAA GGCGATGCGT TCCGCGCGCA GGTCACGCTG CGCAACACGA CCGACCGCGC GATGCAGGTG GTCGTGACGC CGCGCGTGAC GGGGCTCGAC GTCGCGCCGC AAACCGTGTC GCTCGCGGCC AACGCGGCGA CCGAGGTCGC GTGGACGATC ACCGTGCCCG AGCAGGCGCT CGACGCGGCC GGCGCGCTGA ACTGGCGGAT CGAAGCGGCC GAGCAAGGCG GCAAGCGCGC GTCCGATGCG CTGGCCGTCG CGCAGAAGGT CGTGCCCGCC CTGCCGGTGA CCGTGCAGCA GGCCACGCTC ACGCAGGTCG ACGGCACGCT GACGTTGCCC GTGGCGGCCC CGGCCGGCGC CGTCAACAAC GCGCAGGGCG CGCCGCGCGG CGGCATCGCC GTGTCGCTGC AGTCGAAGCT CGCGGACGGC CTGCCCGGCG TGCGGCGCTG GTTCGAGCGC TATCCGTACC GCTGTCTCGA ACAGCAGACG TCGCGTGCGA TCGGCCTGCA CGACGCCGCG CAATGGCAGG CGCTGGTGGC ACGGATGCCC GTCTACCTCG ACAGCGACGG GCTCGCGAGC TATTTCCCGC CGTCGTCCGA CGATGCGCAC TACGGCAGCC CGACGCTGTC GTCGTACCTG CTCGTGGTCG CCGACGAAGC CGGCCGCCTC GACCCGCGCT TCGCGCTGCC GGAAGACCTG CGCACGCAGC TCGAAGCCGG GCTCGCACGC TTCATCGACG GCCGCATCGA GCGCAACGCA TGGGCGCCGC GCCAGGATCG CGACCTGCGC AAGCTGGCCG CGATCGAGGC GCTGTCGCGT TACGGTGCCG CGCAAGGCCG CATGCTCGGC TCGATCGAGA TCGCGCCGAA CCAATGGCCG ACGTCGGCGC TGATCGACTA TCACGCGATC CTCACGCGCG TGAAGGACAT CCCGCAGCGC GACGAGAAAC GTGCGCAGGT CGAGCAGATC CTGCGCGCGC GCCTCACGTA CCAGGGCACG CAGCTCGTGT TCTCGACCGC GCGCGACGAC GACCTGTGGT GGCTGATGAC GAGCAACGAG ACCAACGCCG CACGCCTCGC GCTGGAATTC GCGGGCGACC CGGCGTGGAA GGACGAGATG CCGCGCGTGA CGGCCGGCCT GCTCGCGCTG CAACGTCAGG GCGCATGGCA GACGACGACG TCGAACGCAC TCGGCCAACT GGCGGTCGAG CGCTTCTCGC GCACCTACGA GAGCGTGCCG GTGGCCGGCA CGACGAAGGT CGCGCTCGGC GGCAACGAGC GTGCGATCGC GTGGTCGCAG GCAGGCTCGG CCGCGCCCGC CGAGTCGCCC GCGTCGGCCA CGCCCGCGAC CCGCGCCTCC ACCGAACGCA GCGTGCTGAT GCCGTGGCCG CGTGCGTCGC AGGCGCCGGC CACGCTGTCC GTCACCCAGG ATGGCACGGG CCGCCCGTGG GCAACGGTCG AAAGCCTCGC GGCCGTGCCG CTGCGCACGC CGTTCGCGGC CGGCTACCGG ATCACGAAGA CCGTCACGCC CGTGTCGCCC GCCGTCAAGG GCGTGCTGAC GCGCGGCGAC GTCGTGCGCG TGCATCTCGA CATCGACGCG CAGAGCGACA TGACGTGGGT CGTCGTCAAC GATCCGATTC CGTCCGGCGC GACGATTCTC GGCTCGGGCC TCGGCCGCGA CTCCGAGGCC GCGACGCAGG GCGAGAAATC CCCGGACGGC GCATGGCCGG CGTTCATCGA ACGCGACTTC GACGGCTACC GCGCGTATTA CGACTATCTG CCGAAGGGCA AACTCTCGGT CGAGTACACG GTGCGGCTGA ACAACGTCGG CACCTTCGGG CTGCCGCCGA CGCGCGTCGA GGCGCTGTAC GCGCCGTCCG TGTATGGCCT GTGGCCGAAC CCGCCGATGA CCGTGAAGCC GGCCGACGCG GGCAAGTCGT GA
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Protein sequence | MKQHNKHNNT HQSNHTTRLL WRIGAIAALG AAAALPLHAL AARTVSVSPQ GTVTEVRQSV VKFDEPMVAF GSASAPNPAR MTCNDSTAAR GQGHWLDDKT WVYDFENDLP PGVRCSVALN DTLRSVAGNA VSGPRRFTFQ TGGPFPVTVR PGSREIEERQ VFVLKLNGPA EPRSALANIW CEAAGIGNRI PVTAADDATR NALLDHFGLK KDAARVLTLS CAQALPASAK MQLVYGKGVA SPSGIANDTE RRFDFTVRAP FTASFSCERE NAKAPCTPLR PLTLSFNAPI SRKNAEAIKL RGPDGSLSPT FGADDHSDEV TTVTFNPPLP AQANLTIELP SGLRDVTDRS LANADLFPLA TRTAPMPPLA KFSSGTFGIV ERFAEPDTPA LVPVTLRNVE ADLHIAGLNT RGAQFSNLKV DDDTTIRQWM RTVERFDNWA MTAGTIDERV PGLLRRTGQH PVYVPLGAGE KMPAPQNRRI DVRSLSLLTG EPGAQAMTLP KADPKALRPF EVVGVPIDKP GFYVLELASP ALGRSLLAKP SSMYVRTTVL VTNLGVHLKQ GRENNLVWVT TLDKGKPVPN ARIRVSDCNG DEIATGKTDA QGLLKIDGQF EPKHECSQSE RFDDYFVSAR VDDPKTGPDM AFVSSNWNRG IESWRFNVPT DTGSEPTVRA HTVFDRTLLR AGETVSMKHF LRTETLQTLA FPAQYPTRVK IRHLGSDQTY KLPLTWSADH SADTQFPLPP AAKLGEYSVT LEGGPDDAPT TSYYSGSFRV EAFRLPVLKG SIGARDAQKS PLVAVKEAPL AVQIDYVSGG GASNLPVQVS ALMKWASPPF ADRFEDFSFT PYRPERSDGN ADDDAQDGDN ASAANNDPDA TKLIADKLPL TLDRNGAGSV TLKGLPDVDA PKRIALEATF ADPNGEVQTI RGDTILWPAA VVAGIKAGRW VSVGQRVPVQ ALAVDLQGKP RASVSIEIKG VAHVTTSSRK RMVGGFYAYD NKSDTRDLGV LCSGKTDDKG RMACDATLEQ AGNVQLIAVA KDGDGRTSNA STSVWVTRED ELWFGGDNTD RIDVIPEKTS YEPGETARFQ VRMPFRYATA LVAVERGGVM ETHIVELTGK NPTVDLKVGE SWGPNVYVSV LALRGRIREV PWYSFFTWGW KAPVEWARAF WREGRHHEAP TAFVDLSKPA FRYGLGEIKV GTGVHRLGVT VTTDATRYTV RGKAQAHVKV TLPNGQPAPA GTQIAVAAVD EALLELMPNN SWDLLDAMLQ RRAYGVETAT AQMEIVGRRH FGRKAVPAGG GGGSAPTREL FDTLLLWNPR VTLDANGSAN VEVPLNDALT RFRIVAVAAV GPDRFGTGST SIRSTQDLQL ISGLPPLVRE GDAFRAQVTL RNTTDRAMQV VVTPRVTGLD VAPQTVSLAA NAATEVAWTI TVPEQALDAA GALNWRIEAA EQGGKRASDA LAVAQKVVPA LPVTVQQATL TQVDGTLTLP VAAPAGAVNN AQGAPRGGIA VSLQSKLADG LPGVRRWFER YPYRCLEQQT SRAIGLHDAA QWQALVARMP VYLDSDGLAS YFPPSSDDAH YGSPTLSSYL LVVADEAGRL DPRFALPEDL RTQLEAGLAR FIDGRIERNA WAPRQDRDLR KLAAIEALSR YGAAQGRMLG SIEIAPNQWP TSALIDYHAI LTRVKDIPQR DEKRAQVEQI LRARLTYQGT QLVFSTARDD DLWWLMTSNE TNAARLALEF AGDPAWKDEM PRVTAGLLAL QRQGAWQTTT SNALGQLAVE RFSRTYESVP VAGTTKVALG GNERAIAWSQ AGSAAPAESP ASATPATRAS TERSVLMPWP RASQAPATLS VTQDGTGRPW ATVESLAAVP LRTPFAAGYR ITKTVTPVSP AVKGVLTRGD VVRVHLDIDA QSDMTWVVVN DPIPSGATIL GSGLGRDSEA ATQGEKSPDG AWPAFIERDF DGYRAYYDYL PKGKLSVEYT VRLNNVGTFG LPPTRVEALY APSVYGLWPN PPMTVKPADA GKS
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