Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bamb_3972 |
Symbol | |
ID | 4312868 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria AMMD |
Kingdom | Bacteria |
Replicon accession | NC_008391 |
Strand | + |
Start bp | 870864 |
End bp | 872189 |
Gene Length | 1326 bp |
Protein Length | 441 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 638151814 |
Product | major facilitator transporter |
Protein accession | YP_775860 |
Protein GI | 115358722 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.107532 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGAAACGT CCGCCCTTTC GTTCGCCGGC TCGCAGGTCG ATGCCCGCGC CGCCGCGAAG AAGCGCCGCC TGATCGCGGC CGCCGCGGTC GGCAACGCGC TCGAGTTCTA CGACTTCACG GTCTACAGCT TCTTCGCGAT CCTGATCGGC AAGCTGTTCT TTCCCGTGCA CTCGTCGTTC GGGCAGTTGA TGCTCGCGGT CGCGAGCTTC GGCGTTGGCT TCGTCACGCG TCCGCTCGGC GGGCTCGTGA TCGGCATGTA CGCCGACCGC GCCGGCCGCA AGAAGGCGAT GATCCTCACG CTGCTGCTGA TGGCGCTGGG CACCGCGACG ATCGCGGTCG CGCCGACCTT CGCGCAGATC GGCCTCGCCG CACCGCTGCT GCTCGTGCTC GCGCGGCTCC TGCAGGGGTT CGCGTCGGGC GGCGAAGTCG GCGCGTCGAC GACGCTGCTG CTCGAACAGG CGCCGCAGCA CCGCCGCGGC TTCTACGCGT CGTTTCAGTT CTCGAGCCAG GGGCTTGCCG CGCTCGCGGG GGCGCTGACC GGCGTCGCGC TCACGTCGAC ACTCAATGCC GCGCAGCTCG AAAGCTGGGG CTGGCGCGTG CCGTTCATCA TCGGCACGCT GTTCGTGCCG CTCGGCTACT GGCTGCGCCG CACCGTCGAG GAAGTGCCGC CTGCCGCGCC CGCAGCCGCC GCCACGCACG ACGAGCCGGT CGCGTCGCTG CCGCTCGCCG CCGTGCTGCG CCATCACGGC AAGGCCGTGT TCGCGGGCCT CGGCGTGACG ATCGGCGGCA CGTCGATCCA CTACATCATC GTGTTCTACA TGGCGATCTA CGGCGTGCAG GTGCTGCACC TGCCGACCTG GCTGTCGATG ACGGCCGGCT GCGTCGCCGG CGCGATCCTG ATGCTCGTGA CGCCGATCGG CGGCCACCTC TCGGATATCT ATGGACGCAA CCGGATCGCC TGGTGGACGC GCATCGTGCT GATGGCCGCG ATCTATCCGG CGTTCATTGC GCTGAACCGC TGGCCGGGCG CCGCGTCGCT GCTCTCGATC ATCGCTGCGC TGTCGATCGT GCACGCGATC AACATCGGCG CGACGGGTGC GATGCTCGGC GAATTGTTCC CGCGCGCGGT GCGGGCGACC GGCGGTGCGC TGGTGTATAG CGTGGGCGTC GCAATCTTCG GCGGCTTCGC GCAGTTCTTC GTCACGTGGC TGATCGCGGC GACCGGGAAT GCGAATGCGC CTGCGTGGTA TGCGATCGGG TGTGGCGCGT TCACGCTGCT TGCGATTCGG TGCATGGATG AGAAGGCGGG GAAGGCGCTT GATTGA
|
Protein sequence | METSALSFAG SQVDARAAAK KRRLIAAAAV GNALEFYDFT VYSFFAILIG KLFFPVHSSF GQLMLAVASF GVGFVTRPLG GLVIGMYADR AGRKKAMILT LLLMALGTAT IAVAPTFAQI GLAAPLLLVL ARLLQGFASG GEVGASTTLL LEQAPQHRRG FYASFQFSSQ GLAALAGALT GVALTSTLNA AQLESWGWRV PFIIGTLFVP LGYWLRRTVE EVPPAAPAAA ATHDEPVASL PLAAVLRHHG KAVFAGLGVT IGGTSIHYII VFYMAIYGVQ VLHLPTWLSM TAGCVAGAIL MLVTPIGGHL SDIYGRNRIA WWTRIVLMAA IYPAFIALNR WPGAASLLSI IAALSIVHAI NIGATGAMLG ELFPRAVRAT GGALVYSVGV AIFGGFAQFF VTWLIAATGN ANAPAWYAIG CGAFTLLAIR CMDEKAGKAL D
|
| |