| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_3960 |
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| Symbol | |
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| ID | 4312856 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008391 |
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| Strand | - |
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| Start bp | 857648 |
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| End bp | 859201 |
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| Gene Length | 1554 bp |
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| Protein Length | 517 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 638151802 |
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| Product | 3-hydroxy-acyl-CoA dehydrogenase |
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| Protein accession | YP_775848 |
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| Protein GI | 115358710 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1250] 3-hydroxyacyl-CoA dehydrogenase |
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| TIGRFAM ID | [TIGR02279] 3-hydroxyacyl-CoA dehydrogenase PaaC |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.524897 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTGGTT CTTCTGCATA TTCGGTGAAT TCGGGCGCGC TGGCGCCGTC GGCGGTCGTC
GGCGTGATCG GCGCGGGCGC GATGGGCGCG GGCATCGCGC AGGTCGCGGC GGCCGCCGGT
CATACCGTGC TGCTGTACGA CCTGAACGAG GCGGCGTGCG ACAAGGCGCT CGCCGGCATC
CGCGCGCAGT TCGCGCGACT CGCGGAGAAG GGGCGCATGG AGCCGGCGCA GGCCGACGCG
GCCGGCAACC GGATTCGCGC GGTGCGCGCG CTGGCCGAGT TCGCTGGCGC CGCGCTGATC
GTCGAGGCGG CGGCCGAGCG TCTCGACGTG AAGCGCGAGA TCTTCGCGAC GCTCGAGCGC
CATGTCGACG AGACTTGCGT GCTGGCGACC AACACGTCGT CGATCTCGAT CACGTCGATC
GCGGCCGGGC TGCGCGCGCC CCAGCGCGTG GCCGGCATGC ACTTCTTCAA TCCGGCGCCG
CTGATGGCGC TCGTCGAGGT GGTCAGCGGG CTCGCGACCG CGCCGGAAGT CGCGCAGGCG
CTCCATGCGA CCGCCGCCGC GTGGGGCAAG CAGCCCGTGA TGGCGAAATC GACACCGGGC
TTCATCGTGA ACCGCGTCGC CCGGCCATAT TACGCGGAGG CGCTGCGCGT GCTGAACGAG
CAGGGCGGCA CGCCGGCCTC GATCGACGCG GTGATGCGCG ACGCCGGCGG CTTCCGCATG
GGGCCGTTCG AGCTGATGGA CCTGATCGGC CACGACGTGA ACTTCGCGGT GACCGAGTCG
GTGTTCCGCG CGTACTTCAA CGATCCGCGC TACACGCCGT CGCTGATCCA GCAGGAACTC
GTGAACGCGG GCTTCCTCGG GCGCAAGTCG GGGCGCGGCT TCTATTCGTA TGCGGACGGT
GCGACGCCGC CCGCGCCGGA ACTCGAAGCG CCGCGCGACG CGCCGGCCGC CGTCGTGCTG
TTCGCGCAGG ACGGCCCGGC CGCCGCGCTG CATGCACGCT TGGCCGAACG CATCGCGGGT
GCGCGGCGCG ACGGCGCGCA TGCGGACGAA CTGCTCGCCG TGGCCGGGCG TGCGTCGATC
GCGCTGACCG ACGGCCGCAC CGCGACGGTG CGCGCCGCGC AAACCGGCGT GGCCGATCTC
GTGCTTGTCG ATCTCGCGCG CGACTACACG CAGGCCGGGC TGGTCGCGCT GACGCGCGCG
CTCCAGTGCG GCGACGCCGC CTACGCCGAT GCGGTCGGCC TGTTCCAGCG AGCCGGTTTC
CGCGTCGTCG GCGTCGCCGA CGTGCCGGGC ATGGTTGCGA TGCGCACCGT CGCGATGCTC
GCGAACGAGG CGGCCGACAC GATCAACCAG GGCGTGTGCT CGCCCGCCGA TCTCGATCTC
GCGATGGAGA AGGGCGTGAA CTACCCGTGC GGCCCGCTCG CGTGGGCCGA TGCGATCGGC
ATCGGCCGCG TGCATCGCGT GCTGTCGAAC CTCGCGGCGA GCTACGGCGA GGACCGCTAT
CGCGTGTCGC CGCGCCTCGC CGCGTTGCAC GCGGCCGGCC GCACGTTCCG CTAG
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| Protein sequence | MAGSSAYSVN SGALAPSAVV GVIGAGAMGA GIAQVAAAAG HTVLLYDLNE AACDKALAGI
RAQFARLAEK GRMEPAQADA AGNRIRAVRA LAEFAGAALI VEAAAERLDV KREIFATLER
HVDETCVLAT NTSSISITSI AAGLRAPQRV AGMHFFNPAP LMALVEVVSG LATAPEVAQA
LHATAAAWGK QPVMAKSTPG FIVNRVARPY YAEALRVLNE QGGTPASIDA VMRDAGGFRM
GPFELMDLIG HDVNFAVTES VFRAYFNDPR YTPSLIQQEL VNAGFLGRKS GRGFYSYADG
ATPPAPELEA PRDAPAAVVL FAQDGPAAAL HARLAERIAG ARRDGAHADE LLAVAGRASI
ALTDGRTATV RAAQTGVADL VLVDLARDYT QAGLVALTRA LQCGDAAYAD AVGLFQRAGF
RVVGVADVPG MVAMRTVAML ANEAADTINQ GVCSPADLDL AMEKGVNYPC GPLAWADAIG
IGRVHRVLSN LAASYGEDRY RVSPRLAALH AAGRTFR
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