Gene Bamb_3932 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_3932 
Symbol 
ID4312828 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008391 
Strand
Start bp821667 
End bp824261 
Gene Length2595 bp 
Protein Length864 aa 
Translation table11 
GC content70% 
IMG OID638151774 
Producthypothetical protein 
Protein accessionYP_775820 
Protein GI115358682 
COG category[S] Function unknown 
COG ID[COG0392] Predicted integral membrane protein
[COG2898] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.57988 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCTTCCC GCCACTCTGG TCCGCCCGGC CGCGCCGCGG CGGCGCTCGC CCGTGTGTCG 
ACGCTGATCC GCAACGAGCG CGTGCTGTCG CCGCTGCTCG CGCTCGGCAT CGGCCTGCTG
CTGATCGTGG TTTTCCAGCA CCTGTCCGAA TCCGTCGACT ACCGGTCGGT GATCCGCCAG
CTGCGCCACA TGTCCGTCGG CGAATGGGGC GCATCGCTCG CCGCGACGGC CCTCAGCTAT
CTCGCGCTCG TCGCCCGCGA TGCGGTGGGC CTACGCTACG TCGCCGCGAA GGTGCCGCGC
GCCGCGCTGT GGATCGGCTC GATCGCCGGC TCCGCGCTCG GCAACGCGAC CGGCTTCGGC
GCGCTCACGG GCGGCGCCGT GCGCGCGCGC GTGTACGGCG TGTCGGGCGT CACGCCCGCG
CAGATCGGCC GGATGACGGT ATTCACCAGC GGCACGCTCG CACTCGCGCT GGTGCTGATG
ACGGCGGTCG GCATGGTCTG CGTGCCGCAG ACGCTCGCCG CGATGCTGCA TGTCGCACCG
GGTGTGCTCA CGTGGAGCGG CGCCGCGCTG CTCGTGGTGC TGGCCGTTGT GGTCGCGCTG
TGCGGCAACA CCGCGCGTCC GGTCGTCACG CGCTTCAAAT GGCTCGCGTT CGACGTGCCG
GCACGGCGCG ACCTCGTCGC GCAGGTCGTC TACGCGGTGC TCGACGTCGT GGCCGCCGGC
CTGACGCTGT GGGTGTTGCT GCCGGTCGCG CCGGTCGGCT TCCCGACCTT CATCACGGTC
TACGCGGCCG CGCTGCTGCT CGGGATGATC GGTCATACGC CGGGCGGGAT CGGCGTGTTC
GAAGCCGCGA TGGTGTTCAC GCTGGGCCGC GAAGTGCCCG CGCACGCAAT GGTCGCCGCG
CTGATCGCCT ATCGCGCGAT CTACTTCGGC GTGCCGCTCG TGCTGTCGGC CGGCCTGCTG
GCCGGCTTCG AGGGCCGCGC GCTGCGGCGC CGGCTCGTGT CGCGGCAGGC CGCGCGCGTG
TCGCAACTGG CGCCGCTGTT CCTGAGCCTC GTGACCTTCG CGGTCGGCGG GATGCTGGTG
ATCTCGAGCG CGACGCCCGC GTTCTGGCAT CGGATCGCGA TCCTGCGCAA CATCGTGCCG
CTGTGGGTGC TCGAAGGCTC GCAGGTGATC TGCAGCGTGC TGGGTGTCGC GCTGCTGTTC
GTCGCGCGCG GGCTGCTGCG CCGGCTGGAC GGCGCGTGGT GGATGACCTT CGCGCTGACG
CTCGCGAGCC TCGCGCTGTC GCTGGCGAAG GGCCTCGCGT TCGTCGAGGC CGGCGTGCTC
GGCACGCTGC TGGTGCTGCT GCTCGTCAGC CGCCGCCGCT TCAGCCGGCA TTCGTCGCTG
CTCGCCGAGC GCTTCACGGT GAGCTGGTTC GTGTCGGTGA CGATGGTGCT GATCCTCGCG
GTGTGGGTGC TGTGCTTCGC GTTCCGCGAT GTGCCGTACA CGCGCGATCT GTGGTCGCAT
TTCTCGTTCG ACGCACGGGC GCCGCGCGCG CTGCGCGCCA CGCTCGCGTC CGGCGTGTTC
GTCGCGCTGT TCGCGCTGTG GCAGCTGCTG CGCCCCGCGC CGGGCCGTTT CGTGAAGCCG
GTCGCGCAGG ATCTGCTCGA CGCCGAGCAG ATCATCCGCG CGCAGGAGTG CAGCGATGCG
GGCCTCGCGC TGATGGGCGA CAAGTCGTTC CTGTTCTCCG AATCGCGCCG CGCGTTCCTG
ATGTACGCGA AAAACGGCCG CACGTGGGCC GCGCTGCACG ATCCGGTCGG CCCGCGCGAG
GAATGGCCGG CGCTGATCAG CAAGTTCATT GCGCTGGCGC ATGCGCACAG CGGCCGCGCG
GCGTTCTACC AGGTGCGCGC GAACGCGCTG CCGCTGTACC TCGACGCGGG GCTCACGCTG
ATGAAGCTCG GCGAGGAAGC GCACATCGCG CTCGACCGGT TCGACCTGAA GGGCTCGAAC
CGTTCGCACC TGCGCTACGC GCTGCGCCGC GGCGACAAGG ACGCGCTGAG TGTCGAGGTG
ATCGCGCCGT GCGACGTGCC GGCCGCGCTG CCGGCGCTGC GCGACATCTC GGACGGCTGG
CTCGACAGCC GCGATGCGCG CGAGAAGAGC TTCTCGGTGG CCGCGTTCCA CGACGGCTAT
CTCGCGACGC AGTCGGTGAT GCTGGTGCGC CAGGCCGACA AGCCGATCGC GTTCGTCACG
TTCATGACGA CCGACCTCAA CACCGAGGCG ACGGTCGGCG TGATGCGTCA CCTGCCGGAA
GCGTCGCCGT ATGCGATGGA GTATCTGTTT ACGCAGCTCG CGCTGCATCT GAAGGAAGCG
GGGTTCCTCA AGCTGAGCCT GGGTATCGCG CCGTTCTCGG GGATGGGGGC GGCGAAGATG
CCGTCGCCGT GGCACCGGTT CGGGCTGATG GTCTGGCGCT TCGGCGGCCG CTTCTACAAC
TTCCGTGGCT TGCGTGCATT CAAGAGCAAG TTCGAGCCGC ACTGGGAGCC GCGCTATCTC
GCGGCCTCGG GCTCGGTCGG CGTGTTCGTC ACGCTCGCGG ACCTGTCCCT GCTGGCTGGA
GGTCGGCGCT CATGA
 
Protein sequence
MSSRHSGPPG RAAAALARVS TLIRNERVLS PLLALGIGLL LIVVFQHLSE SVDYRSVIRQ 
LRHMSVGEWG ASLAATALSY LALVARDAVG LRYVAAKVPR AALWIGSIAG SALGNATGFG
ALTGGAVRAR VYGVSGVTPA QIGRMTVFTS GTLALALVLM TAVGMVCVPQ TLAAMLHVAP
GVLTWSGAAL LVVLAVVVAL CGNTARPVVT RFKWLAFDVP ARRDLVAQVV YAVLDVVAAG
LTLWVLLPVA PVGFPTFITV YAAALLLGMI GHTPGGIGVF EAAMVFTLGR EVPAHAMVAA
LIAYRAIYFG VPLVLSAGLL AGFEGRALRR RLVSRQAARV SQLAPLFLSL VTFAVGGMLV
ISSATPAFWH RIAILRNIVP LWVLEGSQVI CSVLGVALLF VARGLLRRLD GAWWMTFALT
LASLALSLAK GLAFVEAGVL GTLLVLLLVS RRRFSRHSSL LAERFTVSWF VSVTMVLILA
VWVLCFAFRD VPYTRDLWSH FSFDARAPRA LRATLASGVF VALFALWQLL RPAPGRFVKP
VAQDLLDAEQ IIRAQECSDA GLALMGDKSF LFSESRRAFL MYAKNGRTWA ALHDPVGPRE
EWPALISKFI ALAHAHSGRA AFYQVRANAL PLYLDAGLTL MKLGEEAHIA LDRFDLKGSN
RSHLRYALRR GDKDALSVEV IAPCDVPAAL PALRDISDGW LDSRDAREKS FSVAAFHDGY
LATQSVMLVR QADKPIAFVT FMTTDLNTEA TVGVMRHLPE ASPYAMEYLF TQLALHLKEA
GFLKLSLGIA PFSGMGAAKM PSPWHRFGLM VWRFGGRFYN FRGLRAFKSK FEPHWEPRYL
AASGSVGVFV TLADLSLLAG GRRS