Gene Bamb_3926 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_3926 
Symbol 
ID4312822 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008391 
Strand
Start bp814320 
End bp815444 
Gene Length1125 bp 
Protein Length374 aa 
Translation table11 
GC content66% 
IMG OID638151768 
Productextracellular solute-binding protein 
Protein accessionYP_775814 
Protein GI115358676 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0687] Spermidine/putrescine-binding periplasmic protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.808306 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCATACGG GGAATTCGGA CGGGGACCGA TTGGTCAGGG GAATCGGCGC GCCTCGGCGT 
GCGCGCCGTG CCGTGTGCCG GTTGCTTGTC GTCTTCTCAC TGGGCCTGCC GGCCCTGCCT
GCGTGTGCCG CTTCTCCCGA AGTCGTCGGC GACAACGTGC TGCGTGTGCT CGCGTGGCCC
GGCTATGCGG ACAGCGATGT CGTCAATGCA TTTGAGACGC ACTTTCATGT ACGCGTCGAA
GTGACGTTCG TCGATTCCGA CGAAGCGTTG TGGACGCGGA TGCACAGCGC ATCGCCACCG
CCGTACGACG TGCTCGCGGC CAACACGGCC GAGATCCAGC GCTACGCGCA CGACGACCTG
CTGACGCCGA TCGACCTGTC GCAGATCCCG AACCGCCGGC GGCAACTGCC GAATTTCCAG
CAGCTCGCGA CGATCGGCGG CCTCGTGCGC AACGGCTCGA CCTACGCGAT TCCGTTCACG
TATTCGTCGA TGGGGCTGAT CTACGATCGC AAGCAGGTGC CGGCCCCGCC GCGCTCGATG
CTCGCGCTCT GGAACCCGCG CTACCGCGGC AAGGTGCTCG ACTTCAACAG CGCGCAGCAT
AATTTTTCGT TCACCGCGCT CGCGCTCGGC TATGCCGATC CGTTTCACCT GTCACCCTCG
CAAACGCTCG CCGTCGCGCA CAAGCTGATC GATCTGCGAC GCAACCTGCT CACGTATTAC
ACGCTTCCCG AAGAAGCGAC CGCGCTGTTC ATCCGGCATC GCGCGGCGCT GATGTTCGGC
AACTACGGCA CGCAGCAGGT CGAGCAACTG CGTCGCGCCG GTGCGGATGT GGGCTACGTG
ATTCCGGACG AAGGCGCGCT CGCGTGGCTC GACTGCTGGG GCGTCACGCG TGGCGCGGAG
CATCGCGAGC TCGCGTTCGC GTGGATCAAT TACATGCTCG AGCCCGCGAT CGGCGCGCTG
CTGACCGAGC GCCAGGGGCT TGCGAATACG CTCGCGCCGC CATCCGGTCT CCAGACCGGC
CATCAGCACC TCGTGTGGCT CCAGCCGGTC GAGGACATCG CGCGGCGCGA GTCGCTGTGG
AGCCGCATCG TGTCGGGCGA CCGGCCGGAG TGGTTCGAAA AATGA
 
Protein sequence
MHTGNSDGDR LVRGIGAPRR ARRAVCRLLV VFSLGLPALP ACAASPEVVG DNVLRVLAWP 
GYADSDVVNA FETHFHVRVE VTFVDSDEAL WTRMHSASPP PYDVLAANTA EIQRYAHDDL
LTPIDLSQIP NRRRQLPNFQ QLATIGGLVR NGSTYAIPFT YSSMGLIYDR KQVPAPPRSM
LALWNPRYRG KVLDFNSAQH NFSFTALALG YADPFHLSPS QTLAVAHKLI DLRRNLLTYY
TLPEEATALF IRHRAALMFG NYGTQQVEQL RRAGADVGYV IPDEGALAWL DCWGVTRGAE
HRELAFAWIN YMLEPAIGAL LTERQGLANT LAPPSGLQTG HQHLVWLQPV EDIARRESLW
SRIVSGDRPE WFEK