| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_3917 |
|---|
| Symbol | |
|---|
| ID | 4312813 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008391 |
|---|
| Strand | - |
|---|
| Start bp | 806245 |
|---|
| End bp | 806997 |
|---|
| Gene Length | 753 bp |
|---|
| Protein Length | 250 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 638151759 |
|---|
| Product | RNA polymerase sigma factor |
|---|
| Protein accession | YP_775805 |
|---|
| Protein GI | 115358667 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGTTCG AGCCGGATGT CGACGAAACT GCCCGGGCCG ATCTCGGGCG CGTTGCCGAC
GCGTCGTCCT GGCGCCGTCC GGTGCCCGCG CGACGCATGC AAGGAGAGCA CGACGATGAG
CTTCAGCCGG ACCGCGGGCC TACCCGCTTG CAGCATGCGG CGTTCGCACG GCACGTTGCG
GAGCGGCCTG CGTTGAGCGA CGCCGATCCG GACGCGGAAC TCGTCGCGCG GGTCGGCGCG
CGCGACGCGT CGGCCGTGCG CGTGCTCGTC GCACGCAAGC TGCCGCGATT GCTCGCGCTC
GCGACGCGCA TGCTCGGCGA CCGGGCCGAA GCCGAAGACG TTGCGCAGGA AACCTTCCTG
CGGATCTGGA ATCAAGCGCC GCGCTGGCGG GCCGGTGAAG CACGCTTCGA CACGTGGCTG
CATCGCGTCG TGCTGAACTT GTGCTACGAC CGCTTGCGCG GACGACGCGA GGAGCCGGTC
GACATGCTGC CCGACGTGCC TGACACGCAA CCCGAGCCGG CCGCGCAAGC GGAGTTACGC
TCGCGCGACG CGCGCGTGCG CCAGGCGCTC GCTGCGTTGC CGCCCCGGCA GCGGGAAGCG
CTCGTGCTCC AGTACTATCA GGACATGTCG AATATTGAAG CGGCCAACCT GATGGGCATC
ACCGTCGATG CGCTGGAAAG CCTGCTCGCG CGCGCGAGGC GCAACCTGCG CGCGCAACTG
GCCGGCGACC CACCTAGCGA GGACAAGCGA TGA
|
|---|
| Protein sequence | MPFEPDVDET ARADLGRVAD ASSWRRPVPA RRMQGEHDDE LQPDRGPTRL QHAAFARHVA
ERPALSDADP DAELVARVGA RDASAVRVLV ARKLPRLLAL ATRMLGDRAE AEDVAQETFL
RIWNQAPRWR AGEARFDTWL HRVVLNLCYD RLRGRREEPV DMLPDVPDTQ PEPAAQAELR
SRDARVRQAL AALPPRQREA LVLQYYQDMS NIEAANLMGI TVDALESLLA RARRNLRAQL
AGDPPSEDKR
|
|---|
| |