Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bamb_3886 |
Symbol | |
ID | 4312782 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria AMMD |
Kingdom | Bacteria |
Replicon accession | NC_008391 |
Strand | + |
Start bp | 778950 |
End bp | 780878 |
Gene Length | 1929 bp |
Protein Length | 642 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 638151728 |
Product | TonB-dependent receptor |
Protein accession | YP_775774 |
Protein GI | 115358636 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG4206] Outer membrane cobalamin receptor protein |
TIGRFAM ID | [TIGR01779] TonB-dependent vitamin B12 receptor |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.322303 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATCTTC GCCACCTTCT CGCCACGTCC GCCGCCACCG CGCTGCTCTC CCCGATCGCC CACGCCGCCG GCGATACGAC AATCACGCAG CCGCGCCCGT CCGCGGACGG CACCGACCTG CCGACGATCG CCGTGACCGA CACGCGGCAT CTGCCCGAAT CGTTCGACCA GCGCTATGCA ACAACGCAGG TGCTCACGCG CGCCGATCTC GACCGTCTGT CGCCGAGCGA GCCGAGCATC ACGCAGGCCC TCGCGATGCT GCCGGGCGTG ACCGTCTCGC AGACCGGCGG CCCCGGCTCG TCCGCGTCGG TCAGCATCCG CGGCTCGTCG GCCAGCCAGG TCGCGGTATT CATCGACGGG ATCCGGATCG GCTCGCCGAC CACCGGCATC GCGCCGTGGG CCGACCTGCC GACCGAAGCG TTCGAGCGCG TCGAAGTGAT TTCGGGGCCG GCCGCCGCAT CATTCGGCGC GAACGCGATG GGCGGCGTCG TGCAGCTGTT CACGCGCCGC GCCGCCGGCC AGCCCAACCA GACGAGCGTG TCGTTCGGCG GCGGCTCGAA CAAGACCTTC GACACGCAGT TGCGCACGTC GGGCACCGTG CCGTCGACGG GGCCGCTGGC CGCGCTCGGC GGGCTCACCT ACTCGCTTGG CCTGCACTCG TACAACACCG CCGGCATCGA CGCGACGCGG CCCGTGTTGC CGTACCACGA GGACGGCCGC AATCCGTACC ACGCGCAGGA TCTCGATGCG CGCCTCGGTT ACGCGCGCGA TAACTGGTCG ATCTCGACGT TCGCGCTGTA TCACCGCTCC GACCTGTCCT ATGACAACGC CGGCTATGCG AACCGCGAAC TCGATCATCA GCTGACGACC GGCATCGCGT TCCATCTCGA CATTACGCCC GACACGCAGT TCGACCAGTC GTTCGGTTAT GCGAACGACC GCCAGTTCCT GTATGCGAGC GACCCGGCCA TCCAGACCGA CCGGATCGAC TCGCAGCGCA TCAGTTCGTC GACGTCGCTG ACTCATCAGA CGCACGGCTT CCACCTGTTC GGCCTGCCGC TGTCGGGCGA GACGAAGGTC GCATACGACT TCACGCGCGA GCAGGCGTTC CTGCCGATCG ACGTGCCGGA CGGCGTGCCC ACGCGCAACG ATTCCGCGTT CTCGCTGCAT CAGTCGGCGA CGCTCGGCAG CGTGACGATG TTCGTCGCGG GGCGTCACGA GATCATCGCG GGGAAAGCCG TGAACACCGG CAACGCCGCG CTGTCGTGGG CGATCACGCC GGTCTATACG GCGCGCGTGT CGTACGGCAA CGCATTCCGC CTGCCGTCGT TCAACGACCT GTACTACCCC GGCTACGGCA ATCCGAACCT GAATCCGGAG CGCAGCGATT CGGTCGAAGC CGCGCTCGAC GCGAACACGG CGTACGGCAC GTTCAGCGCC GCGATCTACG ACACGCGCGT CAACAACCTG ATCGCGTACA ACCCGGCGAC GTTCTCACCG ATGAACATCG GCCGTGCGCA TATCCGCGGC ATCGACCTGT CGTACAAGGG CACGCTCGGC CGCACGACGC CGGTGAGCAT CGCGGTGGGG ATTCTCAATC CGCAGGACGA AACCAACGAC AGCTGGCTCA GCCGCCGGCC GCGCCAGACG GTCAGCGTGA ACATCGACCA CACGTGGGAC GAACTGCACC TGCATGCACT GAGCACCGGC GCGTCGTTGA ACTACGGCGG CACGACGTTC GACGACCCGG CCAACGCCAC GTATCTGCCG TCGTATCTGA CCGTGAATCT GCGCGCGTCG TACAAGATCA ATGCGCACCT GACGGTGTCG GCGACGCTGT CGAATCTGTT CGACCGTCAG TACGTGACCG CGTATGGGTA CAACACGCTT GGCCGCACTG CGTTCGGTAA GGTTAGCTAT ACGTTCTGA
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Protein sequence | MNLRHLLATS AATALLSPIA HAAGDTTITQ PRPSADGTDL PTIAVTDTRH LPESFDQRYA TTQVLTRADL DRLSPSEPSI TQALAMLPGV TVSQTGGPGS SASVSIRGSS ASQVAVFIDG IRIGSPTTGI APWADLPTEA FERVEVISGP AAASFGANAM GGVVQLFTRR AAGQPNQTSV SFGGGSNKTF DTQLRTSGTV PSTGPLAALG GLTYSLGLHS YNTAGIDATR PVLPYHEDGR NPYHAQDLDA RLGYARDNWS ISTFALYHRS DLSYDNAGYA NRELDHQLTT GIAFHLDITP DTQFDQSFGY ANDRQFLYAS DPAIQTDRID SQRISSSTSL THQTHGFHLF GLPLSGETKV AYDFTREQAF LPIDVPDGVP TRNDSAFSLH QSATLGSVTM FVAGRHEIIA GKAVNTGNAA LSWAITPVYT ARVSYGNAFR LPSFNDLYYP GYGNPNLNPE RSDSVEAALD ANTAYGTFSA AIYDTRVNNL IAYNPATFSP MNIGRAHIRG IDLSYKGTLG RTTPVSIAVG ILNPQDETND SWLSRRPRQT VSVNIDHTWD ELHLHALSTG ASLNYGGTTF DDPANATYLP SYLTVNLRAS YKINAHLTVS ATLSNLFDRQ YVTAYGYNTL GRTAFGKVSY TF
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