Gene Bamb_3886 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_3886 
Symbol 
ID4312782 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008391 
Strand
Start bp778950 
End bp780878 
Gene Length1929 bp 
Protein Length642 aa 
Translation table11 
GC content66% 
IMG OID638151728 
ProductTonB-dependent receptor 
Protein accessionYP_775774 
Protein GI115358636 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG4206] Outer membrane cobalamin receptor protein 
TIGRFAM ID[TIGR01779] TonB-dependent vitamin B12 receptor 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.322303 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATCTTC GCCACCTTCT CGCCACGTCC GCCGCCACCG CGCTGCTCTC CCCGATCGCC 
CACGCCGCCG GCGATACGAC AATCACGCAG CCGCGCCCGT CCGCGGACGG CACCGACCTG
CCGACGATCG CCGTGACCGA CACGCGGCAT CTGCCCGAAT CGTTCGACCA GCGCTATGCA
ACAACGCAGG TGCTCACGCG CGCCGATCTC GACCGTCTGT CGCCGAGCGA GCCGAGCATC
ACGCAGGCCC TCGCGATGCT GCCGGGCGTG ACCGTCTCGC AGACCGGCGG CCCCGGCTCG
TCCGCGTCGG TCAGCATCCG CGGCTCGTCG GCCAGCCAGG TCGCGGTATT CATCGACGGG
ATCCGGATCG GCTCGCCGAC CACCGGCATC GCGCCGTGGG CCGACCTGCC GACCGAAGCG
TTCGAGCGCG TCGAAGTGAT TTCGGGGCCG GCCGCCGCAT CATTCGGCGC GAACGCGATG
GGCGGCGTCG TGCAGCTGTT CACGCGCCGC GCCGCCGGCC AGCCCAACCA GACGAGCGTG
TCGTTCGGCG GCGGCTCGAA CAAGACCTTC GACACGCAGT TGCGCACGTC GGGCACCGTG
CCGTCGACGG GGCCGCTGGC CGCGCTCGGC GGGCTCACCT ACTCGCTTGG CCTGCACTCG
TACAACACCG CCGGCATCGA CGCGACGCGG CCCGTGTTGC CGTACCACGA GGACGGCCGC
AATCCGTACC ACGCGCAGGA TCTCGATGCG CGCCTCGGTT ACGCGCGCGA TAACTGGTCG
ATCTCGACGT TCGCGCTGTA TCACCGCTCC GACCTGTCCT ATGACAACGC CGGCTATGCG
AACCGCGAAC TCGATCATCA GCTGACGACC GGCATCGCGT TCCATCTCGA CATTACGCCC
GACACGCAGT TCGACCAGTC GTTCGGTTAT GCGAACGACC GCCAGTTCCT GTATGCGAGC
GACCCGGCCA TCCAGACCGA CCGGATCGAC TCGCAGCGCA TCAGTTCGTC GACGTCGCTG
ACTCATCAGA CGCACGGCTT CCACCTGTTC GGCCTGCCGC TGTCGGGCGA GACGAAGGTC
GCATACGACT TCACGCGCGA GCAGGCGTTC CTGCCGATCG ACGTGCCGGA CGGCGTGCCC
ACGCGCAACG ATTCCGCGTT CTCGCTGCAT CAGTCGGCGA CGCTCGGCAG CGTGACGATG
TTCGTCGCGG GGCGTCACGA GATCATCGCG GGGAAAGCCG TGAACACCGG CAACGCCGCG
CTGTCGTGGG CGATCACGCC GGTCTATACG GCGCGCGTGT CGTACGGCAA CGCATTCCGC
CTGCCGTCGT TCAACGACCT GTACTACCCC GGCTACGGCA ATCCGAACCT GAATCCGGAG
CGCAGCGATT CGGTCGAAGC CGCGCTCGAC GCGAACACGG CGTACGGCAC GTTCAGCGCC
GCGATCTACG ACACGCGCGT CAACAACCTG ATCGCGTACA ACCCGGCGAC GTTCTCACCG
ATGAACATCG GCCGTGCGCA TATCCGCGGC ATCGACCTGT CGTACAAGGG CACGCTCGGC
CGCACGACGC CGGTGAGCAT CGCGGTGGGG ATTCTCAATC CGCAGGACGA AACCAACGAC
AGCTGGCTCA GCCGCCGGCC GCGCCAGACG GTCAGCGTGA ACATCGACCA CACGTGGGAC
GAACTGCACC TGCATGCACT GAGCACCGGC GCGTCGTTGA ACTACGGCGG CACGACGTTC
GACGACCCGG CCAACGCCAC GTATCTGCCG TCGTATCTGA CCGTGAATCT GCGCGCGTCG
TACAAGATCA ATGCGCACCT GACGGTGTCG GCGACGCTGT CGAATCTGTT CGACCGTCAG
TACGTGACCG CGTATGGGTA CAACACGCTT GGCCGCACTG CGTTCGGTAA GGTTAGCTAT
ACGTTCTGA
 
Protein sequence
MNLRHLLATS AATALLSPIA HAAGDTTITQ PRPSADGTDL PTIAVTDTRH LPESFDQRYA 
TTQVLTRADL DRLSPSEPSI TQALAMLPGV TVSQTGGPGS SASVSIRGSS ASQVAVFIDG
IRIGSPTTGI APWADLPTEA FERVEVISGP AAASFGANAM GGVVQLFTRR AAGQPNQTSV
SFGGGSNKTF DTQLRTSGTV PSTGPLAALG GLTYSLGLHS YNTAGIDATR PVLPYHEDGR
NPYHAQDLDA RLGYARDNWS ISTFALYHRS DLSYDNAGYA NRELDHQLTT GIAFHLDITP
DTQFDQSFGY ANDRQFLYAS DPAIQTDRID SQRISSSTSL THQTHGFHLF GLPLSGETKV
AYDFTREQAF LPIDVPDGVP TRNDSAFSLH QSATLGSVTM FVAGRHEIIA GKAVNTGNAA
LSWAITPVYT ARVSYGNAFR LPSFNDLYYP GYGNPNLNPE RSDSVEAALD ANTAYGTFSA
AIYDTRVNNL IAYNPATFSP MNIGRAHIRG IDLSYKGTLG RTTPVSIAVG ILNPQDETND
SWLSRRPRQT VSVNIDHTWD ELHLHALSTG ASLNYGGTTF DDPANATYLP SYLTVNLRAS
YKINAHLTVS ATLSNLFDRQ YVTAYGYNTL GRTAFGKVSY TF