| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_3873 |
|---|
| Symbol | |
|---|
| ID | 4312769 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008391 |
|---|
| Strand | + |
|---|
| Start bp | 764426 |
|---|
| End bp | 765895 |
|---|
| Gene Length | 1470 bp |
|---|
| Protein Length | 489 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 638151715 |
|---|
| Product | alpha,alpha-trehalose-phosphate synthase (UDP-forming) |
|---|
| Protein accession | YP_775761 |
|---|
| Protein GI | 115358623 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0380] Trehalose-6-phosphate synthase |
|---|
| TIGRFAM ID | [TIGR02400] alpha,alpha-trehalose-phosphate synthase [UDP-forming] |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0775281 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGGCGT CCGCTTCACG CCCTGGCCGC ACGAACCTTC CCAAACTATT CGCAGGAGAG
CTGGTGAGCC GACTCGTCGT CGTATCCAAT CGCATCGCAG ATCCCCGTAA AGCCGCGGCC
GGCGGGCTGG CCGTGGCCGT GAAAGACAGC CTGCAGGAAT CAGGCGGCGT CTGGTTCGGG
TGGAGCGGCA GGCTGCGCGG TGAAGACGAA CGTACCGCCC AGGGCGACGA CGTGCAGATC
CAGAACGTCG GCGGCATCCA GCTCGCGACG ATCGATCTCG ATCCGCAGGA TTACGACGCG
TACTATCTCG GCTACTCGAA CAACGTGCTG TGGCCGGTGT TCCACTACCG CCTCGATCTC
GCGCAGTTCG ACCGGCGCTT CGCGGACGGC TACCGGCGCG TGAACCAGCT GTTCGCGCGC
AAGCTGAGCA CGCTGCTGCG CCCCGACGAC ACCATCTGGG TCCACGACTA TCAGCTGATC
CCGCTCGCCG CCGAGCTGCG CGCGATGGGC TGCAGGAATC CGATCGGCTT CTTCCTGCAC
ATCCCGATGC CGCCGCCGCC GATCATGGCC GCGATTCCGG AGCACGAGTG GCTGATGCGC
TCGCTGTTCG CGTACGACCT CGTCGGCTTC CAGACCGAAT CGGATCTGCT GCACTTCGAG
CACTACGTCG AGGCGGAAGC CGGTGCCGCA CGTCTGCCGG ACGGCCGCCT GCACGCGTTC
GGCCGCACGC TGTCGGCCGG CGCGTTCCCG ATCGGCATCA ACGTCGACGA ATTCGCGGCG
CTCGCGGAGA ATCGCGACGG AATCGACATG TTCGAGCGGA TGCGCGACGA GTATTCGCGC
CGCCAGCTGC TCGTCGGCGT CGACCGGCTC GACTACACGA AGGGGCTGCC GCAACGCGTG
CATGCGTTCC GTCAGCTGCT CGAACAGTAT CCGGAGAACC GCGATCGCGC GACGCTGATC
CAGATCGCCG CGCCGAGCCG CGAGGATCTC GGCGCGTACG ACGACCTGCG GCGCGAGATG
GACAGTCTGT GCGGCGCGAT CAACGGCGAC TACGGCGAAC TCGAATGGAT GCCGATGCGC
TACATCCACC GCACGGTCGC GCGCAAGCGC CTGCCGGGCC TCTATCGCGC GAGCCGCGTC
GCACTCGTCA CGCCGCTGCG CGACGGGATG AACCTGGTTG CGAAGGAATT TCTCGCCGCG
CAGGACGAGG CCGATCCGGG CGTGCTCGTG CTGTCGCGTT TCGCGGGCGC GGCCGAGCAG
TTGAAGCCCG CGCTGCTCGT GAATCCATAC GACACGCAAG GCACCGCGCA GGCGATCCAG
CGCGCGCTCA CGATGCCGAT CGAGGAACGC CGCCAGCGTC ACGACGCGCT GATGGCGATC
GTGCGCAAGA CCGACGTGCA CTGGTGGCGC ACGCGCTTTC TCGACGCGCT CACCGAAGCC
GCGGAAGTCG CCGCCGCGAC CGCGTCCTGA
|
|---|
| Protein sequence | MAASASRPGR TNLPKLFAGE LVSRLVVVSN RIADPRKAAA GGLAVAVKDS LQESGGVWFG
WSGRLRGEDE RTAQGDDVQI QNVGGIQLAT IDLDPQDYDA YYLGYSNNVL WPVFHYRLDL
AQFDRRFADG YRRVNQLFAR KLSTLLRPDD TIWVHDYQLI PLAAELRAMG CRNPIGFFLH
IPMPPPPIMA AIPEHEWLMR SLFAYDLVGF QTESDLLHFE HYVEAEAGAA RLPDGRLHAF
GRTLSAGAFP IGINVDEFAA LAENRDGIDM FERMRDEYSR RQLLVGVDRL DYTKGLPQRV
HAFRQLLEQY PENRDRATLI QIAAPSREDL GAYDDLRREM DSLCGAINGD YGELEWMPMR
YIHRTVARKR LPGLYRASRV ALVTPLRDGM NLVAKEFLAA QDEADPGVLV LSRFAGAAEQ
LKPALLVNPY DTQGTAQAIQ RALTMPIEER RQRHDALMAI VRKTDVHWWR TRFLDALTEA
AEVAAATAS
|
|---|
| |