| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_3688 |
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| Symbol | |
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| ID | 4312584 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008391 |
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| Strand | - |
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| Start bp | 538608 |
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| End bp | 540113 |
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| Gene Length | 1506 bp |
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| Protein Length | 501 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 638151530 |
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| Product | RND efflux system outer membrane lipoprotein |
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| Protein accession | YP_775576 |
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| Protein GI | 115358438 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.235267 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.483752 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACCGG CTTCGCGTCG CACATTTCAT GTTGCCCACG CTGCCCGCGC TGCCGGCGGC
GGCGCGCTGG CCGCCGTTGC ACTGCTCGCC GGATGTGCGG TCGGGCCGGA TTTCCGCGCG
CCGGAGCCGC CGGTCACCCA GCAGTACACG CGCGATGCGG CGCCCGCAAC CACGGCCGCC
GCCGGCGGTC CGGCCGGCGA CGCGCAGACG TTCGCGTCGT CCGCGCACAC GCTGCAACGC
TGGTGGACGG AATTCGGCTC CGAACCGCTC GACCGCCTCG TCGACACCGC ATGGCGCAAC
AGCCCGACGC TCGCCGAGGC CCGCGCGCGG CTCGACGAAG CGCGGCAGAA CCATGCGGCC
GAAGCCGGCG CGACGATACT GCCGCGCGTC GACGCGAACC TGTCCGCCAC GCGCGAGAAG
GTCGACGTCG CCGCGTTCGG GCTGCCCACC AACATGCCGA ATCCCGGGCC GTTCACGCTG
TATGACGCGT CGGTGAGCGT GTCGTACGCA CTCGACGTGT TCGGCGGCAA CCGGCGCGCG
CTCGAAGCGC TGCGTGCCCA GGTCGACTAT CAGGCGTATA CGCTCGACGC CGCGCGCCTG
ACGCTCGCGG GCAACGTCGT CGCGACCGCG ATTCTGCGCG CGTCGCTCGC GCAGCAAGTC
GCGCTCACGC GGCAGCTCGT CGACGCGCAG GCGCGGCAGT TGCGCATCGT CGAAGCGCGC
TTCGCGGCGG GGGGCGTGTC GCGGGCCGAC GTGCATGCCC AGCGCGCGCT GCTCGCGCAA
ACGCAGGCCT CCCTGCCGCC GCTCGCCGCG CGCCACGCGC AGGCCGGCCA CCGGCTCGCG
ATCCTGCTGG GCGCGCCGCC GTCGGGCGAA GCGTTGCCCG ACCTCGCGCT CGATGCACTC
GCGCTGCCGC GCACGCTGCC GGTCGCGCTG CCGTCGACGC TCGCGCGCGA ACGGCCCGAC
ATCCGCGCGG CGGAGGCCGT GCTGCATCAG GCGAGCGCGA ACGTCGGCGT GGCCACGGCG
AACCTGTATC CGCGTTTTTC GATTTCGGCG GGGATCGGAT CGGAGCGCAC GCGCATCGCG
GATATCGTCA GCGGGCTCAA TGTGTGGAAC GTGGGGCTCG GCCTCACGCA GCCGCTCTTC
CACGGCGGCG AATTGCGCGC GCGGAAACGC GCGGCCGAAG CGGCATACGA CGCCGCGTTC
GCGAGCTATC GGGAAACCGT GCTGCTGGCG CTTCAGCAGG TGGCCGACGC GATGCGCGCG
GTCGAACACG ATGCGGCCGA ATTGCAGGCG AGAGACGACG CCGCACAACA GGCGGCGGCC
AGCCATGCGA TTGCCGGCGA CCGCTACGCG GCGGGCGGAA TCAGCCTGAT CGATCTGCTC
GACGCGCAGC GACAGGTATT GCAGACCGCG CTCGAGCGGA CCCGCGCGCA AGCCGACCGG
CTTGCCGATA CGGCGGCGCT GTTCCAGGCG CTGGCCGGAA ACTGGACGGA TGATTCGCAC
CGCTGA
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| Protein sequence | MKPASRRTFH VAHAARAAGG GALAAVALLA GCAVGPDFRA PEPPVTQQYT RDAAPATTAA
AGGPAGDAQT FASSAHTLQR WWTEFGSEPL DRLVDTAWRN SPTLAEARAR LDEARQNHAA
EAGATILPRV DANLSATREK VDVAAFGLPT NMPNPGPFTL YDASVSVSYA LDVFGGNRRA
LEALRAQVDY QAYTLDAARL TLAGNVVATA ILRASLAQQV ALTRQLVDAQ ARQLRIVEAR
FAAGGVSRAD VHAQRALLAQ TQASLPPLAA RHAQAGHRLA ILLGAPPSGE ALPDLALDAL
ALPRTLPVAL PSTLARERPD IRAAEAVLHQ ASANVGVATA NLYPRFSISA GIGSERTRIA
DIVSGLNVWN VGLGLTQPLF HGGELRARKR AAEAAYDAAF ASYRETVLLA LQQVADAMRA
VEHDAAELQA RDDAAQQAAA SHAIAGDRYA AGGISLIDLL DAQRQVLQTA LERTRAQADR
LADTAALFQA LAGNWTDDSH R
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