Gene Bamb_3591 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_3591 
Symbol 
ID4312487 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008391 
Strand
Start bp420829 
End bp425355 
Gene Length4527 bp 
Protein Length1508 aa 
Translation table11 
GC content71% 
IMG OID638151433 
ProductDEAD/DEAH box helicase domain-containing protein 
Protein accessionYP_775479 
Protein GI115358341 
COG category[R] General function prediction only 
COG ID[COG1201] Lhr-like helicases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.485917 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACGTCA CCGCCACCCG CCCCGCCCAC GCGCTCGACG TGTTCCACCC GGCCGTCGCC 
GCATGGTTCC GTCGCACGTT CGCCGCGCCG ACCGGCGTGC AGGCGCTCGC GTGGCCGCAC
ATCAAGGCGG GCCGGTCGAC GCTCGTGGCC GCGCCGACCG GCTCCGGCAA GACGCTCACC
GCGTTCCTGT GCGCGCTCGA TGATCTCGTG CGCGATGCGC TCGCGCACGA CGGGGCACTG
CCCGACGCGA CGCTCGTCGT CTACGTGTCG CCGCTGAAGG CGCTGTCGAA CGACATCCAC
GTGAACCTCG ACGCGCCGCT CGCCGGTATC GCCGAATCGC TCGCGCAGCT CGGCTTGCCG
GTGCCCGCGA TCCGCACCGC CGTGCGCACC GGCGACACCC CGCAGGCCGA ACGCGCGGCG
CTGCGCAAAC GCGCGCCGCA CATCCTCGTG ACGACGCCCG AGTCGCTGTA CGTGTTGTTG
TCCTCGACGT CGGGACGGCA GATGCTGTCG AGCGTGCGTT CGGTGATCGT CGACGAGATC
CACGCGCTCG CGTCATCCAA GCGCGGCAGC CATCTCGCGC TGTCGCTCGA ACGCCTCGAT
GCGTTGACGG GCCGCGCGTT GCCGCGCATC GGATTGTCGG CCACGCAGAA ACCGATCGAC
GCGGTCTCGC GCTTCCTGGT CGGCGGCCCG GCCGATGCGC CGCGCGACTG CACGATCGTC
GACACCGGCC ACACGCGTGA ACGCGACCTC GCGCTCGAAC TGCCCAACGT GCCGCTCGGG
CCGGTGATGG CGACCGACGT GTGGGACCAG GTGTACGACC GCATCGCCGC GCTCGCGGCC
GCGCATCGCA CGACGCTCGT GTTCGTGAAC ACCCGGCGCA CCGCGGAGCG CATGGCGCGC
CATCTCGCCG AGCGCCTCGG CAAGGACGCG ATCGCCGCGC ACCACGGCAG TCTCGCGAAG
GAACATCGCC TCGACGCCGA ACAGCGGCTC AAGCGCGGCG AGCTGAAGCT GCTCGTCGCG
ACCGCGTCGC TCGAACTCGG CATCGACATC GGCGACGTCG ATCTCGTATG CCAGGTCGGT
TCGCCGCGCG GGATCGCACC GTTCCTGCAG CGCGTCGGCC GTTCCGGGCA CCAGGTCGGC
GGCGTGCCGA AGGGCCGCCT GTTCCCGTTG TCGCGCGACG AGCTGGTCGA ATGCGCGGCG
CTGCTCGACT GCGTGCAGCG CGGCGAGCTC GACGCATTGC GGATTCCCGA GGCGCCGCTC
GACGTGCTCG CGCAGCAGAT CGTCGCCGAA GTCGCCTGCG CGGAATGGCA GGAGGATGCG
CTGTACGCGA GCTTCACGCG TGCGGCGCCG TACGCGCGCC TGTCGCGCGA ACGCTTCGAC
GAGGTCATGA AGATGCTCGC CGAAGGCTTC ACGAGCCGCC GCGGCGTGCG CGGCGCGTAT
CTGCATCGCG ACGTGGTCGG CGGCACGGTG CGCGGACGCC GCAACGCGAT GATGACCGCG
ACGACCTCGG GCGGCACGAT TCCCGACATG GCCGACTACG CGGTGTTGCT CGAACCGCAG
GGCATCCAGG TCGGCACCGT CAACGAGGAT TTCGCGGTCG AGAGCCTGGC CGGCGACGTG
TTCCAGCTCG GCAACCAGTC GTACCGGATC ATTCGCGTGG AAACGGGCCG CGTGCGCGTC
GAGGACGCAC AAGGCCAGTC GCCGAGCATT CCGTTCTGGC TCGGCGAGGC GCCTGGGCGC
AGCGACGAAC TGTCGGCCGC GGTCGGCCGG CTGCGCGCGC GGCTCGACGC GCTGTTCGCC
GAAGGCGATC GCAACACGGA TGCCGGCGGA CGCAAGCGCG GTGCGAGCGG CGTGAACGGC
GCGAATGGTG ATGCAACCGG TAAGACGGCC ACGCGCGGCA AGGCCAAACG AGCCGCCGAA
GCCTCAACCG TCGCCGATTC GCGAAGCGAT GCCGACGGCA CCGCGATCGT CCCGGCCGAA
AGCCGCCTCG CGCCGGCGCT GCGCTGGCTC GCCGACGATC TGCATCTGGC TCCGGACGCG
GCCCGCCAGA TCGTCGACTA CCTCGCCCGC ACGCGCGCGG CGCTCGGCGC GCTGCCGACG
CAGGACACGC TCGTGATGGA GCGCTTCTTC GACGAGTCGG GCGGCACGCA GCTGGTGATC
CATTCGCCGT TCGGCAGCCG CATCAACCGC GCGTGGGGAC TCGCGCTGCG CAAGCGCTTT
TGCCGCACGT TCGACTTCGA GCTGCAGGCC GCCGCGACCG ACGACGCGAT CGTTCTGTCG
CTGTCGCTCG CGCACAGTTT CGCGCTCGAC GAAGTGTGGC GCTACCTGCG CTCGGCCAGC
GCCGAACAAG TGCTGATCCA GGCGCTGCTC GACGCGCCGA TGTTCGGCGT GCGCTGGCGC
TGGAACGCGA CGACCTCGCT CGCGCTGCCG CGCTTCACCG GCGGCCGGCG CACCGCGCCG
CAACTGCAGC GGATGAAGAG CGACGACCTG CTCGCGACCG TGTTTCCCGA ACAGGTCGCG
TGCCTGGAAA ATGTCGTCGG CGAACGCGAG ATCCCGCACC ACCCGCTCGT CGACCAGACG
CTCGACGATT GCCTGCACGA CGCGATGGAT ACCGACGGCT GGCTCGCGCT GCTGCGCCGG
ATCGAGAGCG GCGCGATTGA ACTGATCGCA CGCGACTTGC CCGCGCCGTC GCCGCTCGCC
GCCGAGATCC TGAACGCGAA GCCCTATGCG TTCCTCGACG ATGCGCCGCT CGAAGAGCGC
CGCACGCAGG CCGTGCAGTC GCGCCGCTGG AGCGACCCCG AGTCGGCCGA CGATCTCGGC
GCGCTCGACG CCGACGCGAT CGATGCGGTG CGCGACGAAG CGTGGCCGCT CGTGCGCGAT
GCCGACGAAA TGCACGACGC GTTGCTCACG CTCGCATGCG TCGCCGACAG CGAAGCGCGG
GCGCACGACG GCTGGCCCGA GCGGCTCGCG GAATTGACCG AACGCCGTCG TGCGACGAAA
CTCGTCACAC CGGATGGCGC CACGCTGTGG GTGCCGGTCG AACGGCTGGT CTGCCTACGC
GCGCTGCATC CCGACGCCCG TGTTGCACCG GCGCTGAAGG TGCCGGCCGC ATGCGCGCAG
CCATGGGACG CCGACGCCGC GCTCGTCGAC GTGATCCGCG CGCGGCTCAC CGGATTCGGG
CCGCTGACGC TCGACGCCAT CGCACAGCCG CTCGGCCTGC CGCCCGCGGC GATCGCGACG
GCGCTCGCCG CACTGGAGCG CGAAGGCTAC GTAATGCGCG GCCGCTTCAC GCCCGGCGCG
ACGACCGACG AATGGTGCGA ACGCCACCTG CTCGCGCGCA TTCATCGCTA TACGGTGAAA
CGACTGCGCC GCGAGATCGA GCCCGTCGAG CGCGCCGATT TCATGCGCTT CCTGTTCCAC
TGGCAGCGCC TGACGCCCGA TACGCGTGGA ACCGGCCGCG ACGCGCTCGC AGCCGTCCTC
GAGCAGCTCG AAGGCTACGA AGCCGCGGCG AGCGCATGGG AAGACGCGCT CCTGCCCGCA
CGGCTGACCG ACTATACGGC CGGCGGCCTC GACGATCTAT GCCGCTCGGG CAAGCTCGTG
TGGACCCGCA TCGGCGCACC GGCCCGCGCG GCCGGCACGC CCGTGAAGAC GACGCCGGTC
GTGCTGCTGC CCCGCCGCCA CCTCGGCGCA TGGCAGGCGC TGCGCGACCC GGACGCGCAA
CCGGCGCTGT CCGCGCGCGC GACACAGGTG CGGGACGCGC TCGCCGCCCA TGGCGCGATG
TTCTTCGATG CACTGCTCGA CGAACTGCAC ATGCTGCCCG TCGAACTCGA ACAGGCACTC
GGCGAACTCG TGTCGGCCGG CCTCGTGAAT GCCGACAGCT TCGCCGGACT GCGAGCATTG
CTGAAGCCGG CGGTCAAGCG CAGCGCGACG TATGCGCCGC GCACGCGGCG CGGCGGCGCA
CTGATCGGCG GGATGGACGA TGCGGGCCGC TGGGCGCTCG TGCAACGCGT TTCGCCAACG
AACGACGACG CGCCCACGCC GGCACCGAAG CGCGGTGCGC CCGCGACCGA TCCCGACGCG
CTCGAACACA TCGTCTGGAC GCTGCTGCGC CGCTACGGTG TCGTGTTCTG GCGGCTGCTC
GAACGCGAAG CCGACTGGCT GCCGAGCTGG CGCGAGCTCG TGCGCGTGCT GCAGCGGCTC
GAAGCGCGCG GCGAGATTCG CGGCGGACGC TTCGTCGCCG GGCTCGCGGG CGAGCAATTC
GCGCTGCCGG AGGCAATCCC GATCCTGCGC GAACTGCGTC GCCAACCGGG CGACGGCCAA
TATGTGTGCG TGACCGGCGC CGATCCGCTG AACCTTGCCG GCACGCTGCT GCCCGGCGAC
AAGGTGCCCG CGCTGGCCGG CAATCGCGTG CTGTTCCGCG ACGGCGTGCC CGTCGCGTCG
CTCGTGGCGG GCGCGTTCCA CTACGCGCCC GAGCTGACCC CTGCCTCGCG CGAGGATGCG
CGCCTGCGTC TCGCCCGCCG CTACTGA
 
Protein sequence
MDVTATRPAH ALDVFHPAVA AWFRRTFAAP TGVQALAWPH IKAGRSTLVA APTGSGKTLT 
AFLCALDDLV RDALAHDGAL PDATLVVYVS PLKALSNDIH VNLDAPLAGI AESLAQLGLP
VPAIRTAVRT GDTPQAERAA LRKRAPHILV TTPESLYVLL SSTSGRQMLS SVRSVIVDEI
HALASSKRGS HLALSLERLD ALTGRALPRI GLSATQKPID AVSRFLVGGP ADAPRDCTIV
DTGHTRERDL ALELPNVPLG PVMATDVWDQ VYDRIAALAA AHRTTLVFVN TRRTAERMAR
HLAERLGKDA IAAHHGSLAK EHRLDAEQRL KRGELKLLVA TASLELGIDI GDVDLVCQVG
SPRGIAPFLQ RVGRSGHQVG GVPKGRLFPL SRDELVECAA LLDCVQRGEL DALRIPEAPL
DVLAQQIVAE VACAEWQEDA LYASFTRAAP YARLSRERFD EVMKMLAEGF TSRRGVRGAY
LHRDVVGGTV RGRRNAMMTA TTSGGTIPDM ADYAVLLEPQ GIQVGTVNED FAVESLAGDV
FQLGNQSYRI IRVETGRVRV EDAQGQSPSI PFWLGEAPGR SDELSAAVGR LRARLDALFA
EGDRNTDAGG RKRGASGVNG ANGDATGKTA TRGKAKRAAE ASTVADSRSD ADGTAIVPAE
SRLAPALRWL ADDLHLAPDA ARQIVDYLAR TRAALGALPT QDTLVMERFF DESGGTQLVI
HSPFGSRINR AWGLALRKRF CRTFDFELQA AATDDAIVLS LSLAHSFALD EVWRYLRSAS
AEQVLIQALL DAPMFGVRWR WNATTSLALP RFTGGRRTAP QLQRMKSDDL LATVFPEQVA
CLENVVGERE IPHHPLVDQT LDDCLHDAMD TDGWLALLRR IESGAIELIA RDLPAPSPLA
AEILNAKPYA FLDDAPLEER RTQAVQSRRW SDPESADDLG ALDADAIDAV RDEAWPLVRD
ADEMHDALLT LACVADSEAR AHDGWPERLA ELTERRRATK LVTPDGATLW VPVERLVCLR
ALHPDARVAP ALKVPAACAQ PWDADAALVD VIRARLTGFG PLTLDAIAQP LGLPPAAIAT
ALAALEREGY VMRGRFTPGA TTDEWCERHL LARIHRYTVK RLRREIEPVE RADFMRFLFH
WQRLTPDTRG TGRDALAAVL EQLEGYEAAA SAWEDALLPA RLTDYTAGGL DDLCRSGKLV
WTRIGAPARA AGTPVKTTPV VLLPRRHLGA WQALRDPDAQ PALSARATQV RDALAAHGAM
FFDALLDELH MLPVELEQAL GELVSAGLVN ADSFAGLRAL LKPAVKRSAT YAPRTRRGGA
LIGGMDDAGR WALVQRVSPT NDDAPTPAPK RGAPATDPDA LEHIVWTLLR RYGVVFWRLL
EREADWLPSW RELVRVLQRL EARGEIRGGR FVAGLAGEQF ALPEAIPILR ELRRQPGDGQ
YVCVTGADPL NLAGTLLPGD KVPALAGNRV LFRDGVPVAS LVAGAFHYAP ELTPASREDA
RLRLARRY