| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_3587 |
|---|
| Symbol | |
|---|
| ID | 4312483 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008391 |
|---|
| Strand | + |
|---|
| Start bp | 411653 |
|---|
| End bp | 412879 |
|---|
| Gene Length | 1227 bp |
|---|
| Protein Length | 408 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 638151429 |
|---|
| Product | HlyD family type I secretion membrane fusion protein |
|---|
| Protein accession | YP_775475 |
|---|
| Protein GI | 115358337 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.50636 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.508963 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGGGGCTG CGCTCGCGCC GATTTCTGGC GCCGTCGTCG CAGAGGGCTC GGTGCGCACC
GAAGGCGAAC GCAAAACAGT GCAGCACCTG GAGGGCGGGA TCGTGAAGCA AATCCTGGTC
CGGGATGGCG ATCGTGTGAA GGCGGGCCAA GTGCTGGTTG TGCTGGACAA CGTCAGTCCG
GCGGCCGAAT TATCGGCGTT GCAGGCGCAA TTCGATGCGG AGCAGGCAAA GATTGCGCGT
CTTTCCGCCG AACGCGAACT GAAGGAAACG CTGGCGTTCC CGGCCGCGCT CGAGAAACAG
CGCGACGATC CGCGCGTTGC CGAGTTGCTG GCACGCGAGT CTTCGCTGTT CATCGCGCGC
CGGCGTGCGT TCGCCGACCA GAGCACGATG CTGCGCACCG AACTGGCGCA GACCCGCCAG
GAAATCGCGA TCAGTTCGCA GTTGATTCAG ACGATGAACC GCAGCTACGA CATGGCGCGC
CAGCAGCGGC GGACCAACGA AACGTTGCAA CAGGAAGGTT TCGTTGCTGA AACGAAGGTG
CTCGATTTGC GGCGGGCCGA GGCTGATGCA CTGTCGCGCG TCCAGTCAGG TGCCGCCGAT
CTGAGCCGCG CGAAACAGCG GCAGACTGAT CTCGAACTCC GTATTGCCGG GCTACGTCAT
GACTATGTGA AGGCGGCTGA CGACCAGCTT AAGGAAGCGA CCACACGCGC GATCCAGATT
GGTGAGCGGC TACGCCCAGC TCGCGATCAG TCTGCCCGTA CCCGCGTGAC GGCACCGGTG
GCAGGCGTGA TCGTTGGCTT GAAGGTGCAC ACGATCGGCG CAGTAATCGC GCCTCGCGAG
CCGATCGTTG ATGTTGTCCC CGAAGGGGCG CCGTTGATCG TGGAAGCGAA TATCCGACCG
GACGACGTGC GCGAGATCGC GCCTGGTAGC CACGCCGACG TTCGGCTGAC GGCCTACAAC
TCGCGCACCA CGCCGATGCT CGACGGCAAG GTCACATACA TTTCGGCTGA CGCGCTGACC
GACAGCGACA AGCGCACGCG GTTCTACGTG GTTCGGGTCG AGGTGCCGGC GCAAGCACTG
GAAAGGGCCA ACCGTCTCGC CAAAGAGCCG GTCGCACTCG GGCCAGGGCT CCGGACCGAG
GTTTATATCC GCACGCATGC GCGCTCGGCC TTCGATTATC TGCTCGAACC GGTCAGGGAC
GGGATTCGGA AGTCGATGCG GGATTGA
|
|---|
| Protein sequence | MGAALAPISG AVVAEGSVRT EGERKTVQHL EGGIVKQILV RDGDRVKAGQ VLVVLDNVSP
AAELSALQAQ FDAEQAKIAR LSAERELKET LAFPAALEKQ RDDPRVAELL ARESSLFIAR
RRAFADQSTM LRTELAQTRQ EIAISSQLIQ TMNRSYDMAR QQRRTNETLQ QEGFVAETKV
LDLRRAEADA LSRVQSGAAD LSRAKQRQTD LELRIAGLRH DYVKAADDQL KEATTRAIQI
GERLRPARDQ SARTRVTAPV AGVIVGLKVH TIGAVIAPRE PIVDVVPEGA PLIVEANIRP
DDVREIAPGS HADVRLTAYN SRTTPMLDGK VTYISADALT DSDKRTRFYV VRVEVPAQAL
ERANRLAKEP VALGPGLRTE VYIRTHARSA FDYLLEPVRD GIRKSMRD
|
|---|
| |