Gene Bamb_3488 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_3488 
Symbol 
ID4312384 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008391 
Strand
Start bp293790 
End bp295199 
Gene Length1410 bp 
Protein Length469 aa 
Translation table11 
GC content69% 
IMG OID638151330 
Productmajor facilitator transporter 
Protein accessionYP_775376 
Protein GI115358238 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID[TIGR00711] drug resistance transporter, EmrB/QacA subfamily 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.36718 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCGATT GCAATCCCGT TTCCGTTCCC GTATCCATGA CGGCAGCGAG CCGCCCGACG 
GCGCGCGAGC AGCGCTTCAC GCTGGCGCTT GTCGCGATCG GAATGTTCAT GGCGGTACTC
GATACGACGA TCGTCAACGT CGCGCTGCCC GCGATGCGCA CGAATCTCGG CGCGACGGTC
GCGGAACTCG CGTGGATCGT CGACGCGTAT ACGCTCAGCT TCGCGGCGCT GATCCTCGCG
GGCGGCGCGC TGTCCGACCG GTTCGGCGCG AAGCACGTGT ATCTCGCGGG GCTGGCGTTG
TTCGTCGGCG CATCGGCGGC GTGCGGCGTC GCGTCGTCCG TGGCCATCCT CGTGGCCGCG
CGTTTCGTGC AGGGCATCGG CGCCGCACTC TTTTTGCCCG CGTCGCTCGC AGTCGTGCGC
AGCACTTTCG ACGTGCCTGC CGAGCGGGCG CGCGCGATTG CGGTCTGGGC GGGCATCGCG
TCGGTCGCGG TGGCCGTGGG ACCGGTGCTG GGCGGCATCC TGGTGGATGA TTTCGGCTGG
CGCAGCGCTT TCCTGATCAA TGTGCCGACC GGCGCGCTCG CCTTCGCCGG GGCGGCGGTG
CTCGTCCGGG CGTCGGTCGC GCGGCATGCG CGCCACTTCG ATTGGGCCGG CCAGTGCATC
GGTGCGACGG CACTCGGCGC ACTGTGTTTT GCAGTGATCG AATTGCCGAC GCGCGGCCCT
GGCGCCGCGG AAGTCCGGTG TGCACTGCTG GTCGCCGGGC TCGCTGCCGT CGTGCTGATC
GTCGTCGAGC GGCGCGCCCG CAATCCGATG GTTCCGCTGG TCTGGTTTCG CAATCGTATA
TTCGTTGCGA TGAACGTGAT GGGCAGTCTC GTCTATGTCG GCTACTTCGG TCTGCTGTTC
GTCCTGAGCC TGTACCTGCA CGGGCGCTTC GGCATGAGTG CGCGGCAGAC GGGGCTGACG
TTGTTGCCGT TTGCGCTGAG TTTGTCGCTT GGCAATCTGT TGTCGGGGAA ATGGCAGGGC
CGCGTCCACC CGGTCCGGCT GATGGCAAAC GGCCTCGGGA TGGCGGCGCT GGCCATTCCG
GCGCTCGCGG TCGCGCTCAC GCTGCGCGCG CCGTGGCCGG TGGTCTGGGC GGCCATGGCC
GCCTTCGGCA CCGGGACCGC GTTGTCCGTG GCGCCGATGA TCGCGACCGT GCTCGAACAG
GTGCCTGCGG ATGCGGCGGG CGTGGCGTCG GGATTCCTCA ATGCGGCGAG ACAGGCAGGG
AGCCTGCTCG GCGTGGCCAT CGCAGGCGCC GCGACGATAC TGTTGCCGAA TCTGACCGAC
GCGCTGTGGG CGATCGCGGC GGTCGGCTGT GTCGCCTATG CGACGGCCGC CTTTACCGCG
CGGACGGCGG GCACCGCGAA AGGCACGTGA
 
Protein sequence
MTDCNPVSVP VSMTAASRPT AREQRFTLAL VAIGMFMAVL DTTIVNVALP AMRTNLGATV 
AELAWIVDAY TLSFAALILA GGALSDRFGA KHVYLAGLAL FVGASAACGV ASSVAILVAA
RFVQGIGAAL FLPASLAVVR STFDVPAERA RAIAVWAGIA SVAVAVGPVL GGILVDDFGW
RSAFLINVPT GALAFAGAAV LVRASVARHA RHFDWAGQCI GATALGALCF AVIELPTRGP
GAAEVRCALL VAGLAAVVLI VVERRARNPM VPLVWFRNRI FVAMNVMGSL VYVGYFGLLF
VLSLYLHGRF GMSARQTGLT LLPFALSLSL GNLLSGKWQG RVHPVRLMAN GLGMAALAIP
ALAVALTLRA PWPVVWAAMA AFGTGTALSV APMIATVLEQ VPADAAGVAS GFLNAARQAG
SLLGVAIAGA ATILLPNLTD ALWAIAAVGC VAYATAAFTA RTAGTAKGT