| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_3485 |
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| Symbol | |
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| ID | 4312381 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008391 |
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| Strand | + |
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| Start bp | 287424 |
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| End bp | 291521 |
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| Gene Length | 4098 bp |
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| Protein Length | 1365 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 638151327 |
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| Product | ImcF domain-containing protein |
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| Protein accession | YP_775373 |
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| Protein GI | 115358235 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3523] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03348] type VI secretion protein IcmF |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.547503 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGAAGT TCCAGTTCCT GTCGTTTCTG GCCTCGCGCC AGTTCCTCGC GTTCCTCGCA
CTGATCGTCG TTGCATTGGT GATCTGGTTC GTCGGGCCGC TTTTCGCGTT CGGCGGGCTC
AAGCCGCTCG CCGGCGCTGG CATGCGCGTG CTGCTGATCG CGCTGTTGCT CGCCGGTGTG
CTGCTCTGGC TCGCGGGCTT GTCGACGAGC GTCGTGTTCG TCGTGTTGCT GTGCCTGCTG
ATCTGGTATG CGGCGCCGCT GCTGTCGCTC GGCCACACGG CGCCGTTCGA GCCCGTGTCG
GCCCGACTCA CCGCGATCGC ACTGGTCGTG GCCGCTTTTG TCCTCTTCTG GATCGTCCGC
CTGTGGCAAA AAATGCGTGA AGACGACGCG TTCATGAAGA AGATGCTGCG CATGGATCGC
CGCGAGAATG AATCGCCTGC CGCACCACGC TTGCGGAAAA TCGAAGCGGT CGTGACGAGC
GCGCTCGCGC GCCTCAAATC GATGCGTACC GGCGCGCGCG GTCTTGGCAA GCTGTTCCAG
GGCAAGCGGT ATTTGTACGA GTTGCCTTGG TACATCACGC TCGGCTCGCA AGGGGCCGGC
AAGACCAGCG TACTGATGAA CGGCGGATTG GTGTTTCCCG TCGCCGAGCA GATGCAGCGC
GCGGCCGGGC CATCGGCCGG CGACGCTGCC GCGGTGGACT GGTGGCTGAC CAACGACGCG
GTGCTGATCG ACACGGCCGG CTACTACACG CATCATGGCA TGTCGACGGC CGAGGACGTC
AAGGCGCCCG CCGCGGAAAC GGGAAAGCCG GCCACCGGCG TTCCGGGCAA GGGCGGCGCC
GATGCCCAGC CGGCTGCGAA AAGCGCTGAA GACGATACGA AGCGGAATGA GGCGTCGCAA
TCGAAAGCCG CCGCCGTGTC GACAGCCGGC GGCCCAGTCG TTCCGCCCGA TCAAGGTGCG
GGCGAACGCC GACAGAAGGT CGATCGCGCG GAATGGCTTG GATTTCTGGG CATGCTGCGC
CGGCATCGGC CTCGCGCGCC GATCAACGGC GCGTTGCTGA CGATCGATCT TGCCACGTTG
GCCGGTGGCG ACGAACAGGC GCGTGTGGCT GAGGCTGCCA CGTTGCGCGC GCGGCTGGCC
GAACTGAGGC AGGAGCTGGG TATTCGTTTC CCTGTCTATG TAATGGTCAC GAAGATGGAC
CGTCTGACGG GTTTCGCCGA GTATTTCGGG GGGCTGACGG CCGAGGGGAG GGCGCAGACA
TGGGGCTTCA CGCTTCCGTA TGGCAAGGAA ACGGTTGCGA AGGAACGGCT GCGCGCCCGC
TGCCAAGCGG AACTTGCCGA ACTCTCGCAA CGGCTTAGCG GTTCGATCGA TACGCATCTG
CAGGATGAGT ACGATACGCG CAAGCGCCGG TCGCTTGCGG CGCTGCCCGA GGAGTTTGCT
GCGCTGCTCG GACCGCTGCT CGATCTGATC GACCGGGTGT TTCTCGATTC GCGCTACGAC
GATACCCAGC TCCATTCGAC GTTGCGCGGC GTGTATTTCA CGAGTGCACG ACAACGGGAC
AGCGAGATCG TCGTGGAGCG CGGGACAGTC GTTCAACGTC TTCTGTCGAC TCAGGACCAC
GCCCCCGTTT CATCGGCGCG AGCCGAGGGC AACCAAGGGT TCTTCCTGCA CGATCTGCTG
ACCCGTGTCG TGTTCCCGGA AGCGCATCTG GTGAGCCCCA ACCTGCGTTG GGAATACCGC
TACCGGCTCT TGCGCCTGAT CGGCCACACA TTGGCGCTGC TGTTGTTCGT GTGGCTGGCG
ATCGGCTTGC GCGTGAGCTT CGGCCACAAC GGCGACTATC TCGCCACGAT TGGCCGAAAG
GTACAGGCGC TTACGGCCCG CGTCACGGAG TTGTACAAGA CGCCGAAACT GCAAGCCGTG
CCCGATACGC TGACAGACGC GCGTTATTTG CCGACCTTCC CGGGACTCGA CCTGTCCGAT
CCGGACAGCG CGTGGCGCTA CGGTCTCTAC ACGCCGGTGG ACATTGCAAC CGAAAGCCAC
CGCACCTACG ATGCGCTCGA AGATAACCTG CTGTTGCCGC AGATCGTGCA TCGTTTGGAA
GACGTCATGT CAGGTGCAAT TGCCAACAAG GATCCAAAGG CGGCCTACGA TGCGCTGCGC
GTATACCTGA TGCTGTACGA CAAGGCGAAG TTCAATGCCG CCGACGTCAA GGCGTGGGTG
CTCGACGACT GGGCGAAGAC CGATAGCGCG GCTGCTTTCG GTGGAAGGGC GTCGATGATC
GACCACGTGC AACAGCTTTT CTCCGGAGCG CGCGTGGTGC AGTCTCCGGT GATCCGCAAC
GACGCGCTGG TGCAGCAGGC GCGCGCTTTT CTCGAGGGTA GCAACGCCAC CGACCGCCTT
TACCAGCGCG CAAAGGCGGC CATGCTGAAG GAAGCGCCCG ACGAGTTTAC GTTGCTGCGC
GCGGTAGGCC CGCAAGCCGG CACGGTATTC ACGCGAGCAA GCGATGCACC GTTGTCGCGC
GGCGTGTCGG GGCTTTTCAC GTTCGATGGC TATCGGAATC TGTTCGACAA ACGGCTGCCC
GAGTTCGTGC AGATCGCGCG CGACGACGAC GCATGGGTGA TGGGACGCTC ATACTTGGGC
GAGGCTCAAA AAAAAACGGC TGAGATCGTG AGCAACGCCG CCGGCGCGGA CGATGCGTTG
ACCGACGCGG TTCGCCGCGA ATATCTGATG GAATATGCCC AGCAGTGGGA CGCGTTTCTC
AACGACATCC GGACCGTAAG CGGCACGAGC CTTGCGTTCA ATCTGAAGGT GCTGCGCAGC
TTCGCGGCAC CTGATTCGCC GCTCGTGCGG CTTGCCCGCG CAGCCGTGCA CGAGACGACG
CTCGCGCAGC CGATGACGGT GACGGACGGT TCGCTGCTGC AGCGGGCCGC CGACCAGATC
AATCAGAAGA CGGACAAGGC GCTGGGTATT CGGGCGTCGG AGCGCGTTGA ACGGGAACTC
GTCGACAATC ACTTTGCGGC GCTGCGCGAG GTCGTTACCG GGAGCGTGGA TGCGCAATCC
GATACGCAAC CTGCTGCCAC ACAGGCGGAC AAGACGGGGC TGGATGGCGT TACCAGCTTG
CTGAACGACT ATTACACGGC GCTCACCGTT GCCGACAATG CGTTATCGAA CAACAGCATG
CCGCCGGCGA GCGACGTAGC TGCGAAACTG AAAATGACGG CCGACACGAT GCCGGCACCC
TTTCGCGCCG TATTGCTGCA GCTTGCCGCC GATGGTTCGC GAGAAGTCAA TCAGGGGATC
GGCCAACTGC TGTCGCGCCA GATGCAGGCG GTGGTCGGCG ACGCTTGCCG GCTGACGATC
GAAGGAAATT ACCCGTTTTC GCCCGACAGC AAGCGCGACG TCGGTATCGA CGACTTCACG
CGCGTGTTTG CGCAGGGCGG CGTGATCGAT GACTTCTTCG TGAAGACGCT GGCACCGTTC
GTCGATACGT CCGCGAAGCC GTGGCGCTAT CGGACGCTGC CAGGCGCGAC CGAGCCCGTC
CAGGGGCCGG ATCTGGAGCC GTTCGAGCAT GCGAAGGCAA TCCGCGACAT CTTTTTCAAC
GATCCCGGCC ACAAGCAACT GACCTGGAAG GCGGACATCC GAATTCCCGA ACTCGACCCG
ACGATCATGA GTCTGTCGCT CGACATCGAT GGACAGACTA CGCTCTATCA ACATGGCCCG
GTGGCGCCTT TCACGGTCAC GTGGCCGGGA CCGCGTGGCG GCGTCCACAC GGAAATCACG
GCCAGCCCGC GCATCCGGCC GGACACGTCG ACGATTTCAA CCGATGGCCC TTGGGCGTTG
ATGCGCCTGC TCGAGAAAGG TCGCGTGATG GAGACGGCGA CGCCGGGCCG CACGCGCGTC
GCGTTCAGTT TCGACGGTCG TCAAGCGGCG CTCGACGTCG CGAGCGCCGG GAGTGTCGCG
AATCCGCTGA CGAGCGACGT GCTGAAGACG TTCCGGTGCC CCAGCACGAT GTCGGCGTTC
AACCTGCCGG ATAGCGGCCC GCCGCCGGGG TTGCCGCGAG GCATGTTGCC GGCGAGCGCG
GGAAGCGCTT CCCGCTGA
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| Protein sequence | MKKFQFLSFL ASRQFLAFLA LIVVALVIWF VGPLFAFGGL KPLAGAGMRV LLIALLLAGV
LLWLAGLSTS VVFVVLLCLL IWYAAPLLSL GHTAPFEPVS ARLTAIALVV AAFVLFWIVR
LWQKMREDDA FMKKMLRMDR RENESPAAPR LRKIEAVVTS ALARLKSMRT GARGLGKLFQ
GKRYLYELPW YITLGSQGAG KTSVLMNGGL VFPVAEQMQR AAGPSAGDAA AVDWWLTNDA
VLIDTAGYYT HHGMSTAEDV KAPAAETGKP ATGVPGKGGA DAQPAAKSAE DDTKRNEASQ
SKAAAVSTAG GPVVPPDQGA GERRQKVDRA EWLGFLGMLR RHRPRAPING ALLTIDLATL
AGGDEQARVA EAATLRARLA ELRQELGIRF PVYVMVTKMD RLTGFAEYFG GLTAEGRAQT
WGFTLPYGKE TVAKERLRAR CQAELAELSQ RLSGSIDTHL QDEYDTRKRR SLAALPEEFA
ALLGPLLDLI DRVFLDSRYD DTQLHSTLRG VYFTSARQRD SEIVVERGTV VQRLLSTQDH
APVSSARAEG NQGFFLHDLL TRVVFPEAHL VSPNLRWEYR YRLLRLIGHT LALLLFVWLA
IGLRVSFGHN GDYLATIGRK VQALTARVTE LYKTPKLQAV PDTLTDARYL PTFPGLDLSD
PDSAWRYGLY TPVDIATESH RTYDALEDNL LLPQIVHRLE DVMSGAIANK DPKAAYDALR
VYLMLYDKAK FNAADVKAWV LDDWAKTDSA AAFGGRASMI DHVQQLFSGA RVVQSPVIRN
DALVQQARAF LEGSNATDRL YQRAKAAMLK EAPDEFTLLR AVGPQAGTVF TRASDAPLSR
GVSGLFTFDG YRNLFDKRLP EFVQIARDDD AWVMGRSYLG EAQKKTAEIV SNAAGADDAL
TDAVRREYLM EYAQQWDAFL NDIRTVSGTS LAFNLKVLRS FAAPDSPLVR LARAAVHETT
LAQPMTVTDG SLLQRAADQI NQKTDKALGI RASERVEREL VDNHFAALRE VVTGSVDAQS
DTQPAATQAD KTGLDGVTSL LNDYYTALTV ADNALSNNSM PPASDVAAKL KMTADTMPAP
FRAVLLQLAA DGSREVNQGI GQLLSRQMQA VVGDACRLTI EGNYPFSPDS KRDVGIDDFT
RVFAQGGVID DFFVKTLAPF VDTSAKPWRY RTLPGATEPV QGPDLEPFEH AKAIRDIFFN
DPGHKQLTWK ADIRIPELDP TIMSLSLDID GQTTLYQHGP VAPFTVTWPG PRGGVHTEIT
ASPRIRPDTS TISTDGPWAL MRLLEKGRVM ETATPGRTRV AFSFDGRQAA LDVASAGSVA
NPLTSDVLKT FRCPSTMSAF NLPDSGPPPG LPRGMLPASA GSASR
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