| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_3442 |
|---|
| Symbol | |
|---|
| ID | 4312177 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008391 |
|---|
| Strand | - |
|---|
| Start bp | 237922 |
|---|
| End bp | 239448 |
|---|
| Gene Length | 1527 bp |
|---|
| Protein Length | 508 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 638151284 |
|---|
| Product | methylmalonate-semialdehyde dehydrogenase |
|---|
| Protein accession | YP_775330 |
|---|
| Protein GI | 115358192 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1012] NAD-dependent aldehyde dehydrogenases |
|---|
| TIGRFAM ID | [TIGR01722] methylmalonic acid semialdehyde dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.0115375 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGCCG CAGTTCCCCA GACCACCCTC GCCCTGCCCA CCGCCAAGCT GCTGATCGAC
GGCGCGTTCG TCGATTCGCA AAGCGCCGAA TGGGGCGACA TCGTCAACCC CGCGACGCAG
GAAGTGATCG GCCGCGTGCC GTACGCGACG CTCGACGAGG TCGACGCCGC GATCGCGTCC
GCGCAGCGCG CGTTCCAGAC GTGGAAGACC ACGCCGATCG GCGCGCGGCT GCGCATCATG
CTGAAATTCC AGGACCTGGT GCGCCGCAAT CTCGAACGGA TCGCGCACAC GCTGACGGCC
GAGCAAGGCA AGACGCTGCC CGACGCGCAG GGCGACATTT TCCGCGGCCT CGAAGTGGTC
GAGCACGCAT GCTCGATCGG CACGCTGCAG CAAGGCGAAT TCGCGGAAAA CGTCGCGGGC
GGCGTCGACA CCTACACGCT GCGCCAGCCG ATCGGCGTGT GCGCGGGCAT CACGCCGTTC
AACTTTCCCG CAATGATCCC GCTGTGGATG TTCCCGATGG CGATCGTATG CGGCAACACG
TTCGTGCTGA AGCCGTCCGA ACAGGACCCG CTGTCGACGA TGCAGCTCGT CGAACTCGCG
ATCGAGGCCG GCGTGCCGCA GGGCGTGCTG AACGTCGTGC ACGGCGGCAA GACGGTGGTC
GACCGTCTCT GCACGCACCG GGACATCAAG GCGATCTCGT TCGTCGGCTC GACGCGCGTC
GGCACGCACG TGTACAACCT CGGCAGCCAG CACGGCAAGC GCGTGCAGTC GATGATGGGC
GCGAAGAACC ACGCGGTCGT GCTGCCCGAT GCGCACCGCG AGCAGGCGAT CAACGCGCTG
GTCGGCGCGG GCTTCGGCGC GGCGGGCCAG CGCTGCATGG CGACCTCGGT CGTCGTGCTG
GTCGGCCGCG CGCGCGACTG GCTACCCGAT CTGGTCGAAA AGGCGAAGGC GCTGAAGGTG
AACGCGGGCG CCGAAGCCGG CACGGACGTC GGGCCGGTCG TGTCGAAGGC GGCGAAGGCG
CGCGTCCTGT CGCTGATCGA CGCCGGCGTG AAGGAAGGCG CGACGTTGTT GCTCGACGGC
CGCGACGTGA AGGTGCCGGG CTACGAGCAG GGCAACTTCG TCGGCCCGAC GATCTTCTCG
GGCGTGACGA CCGACATGTC GATCTATCAG GAGGAAATCT TCGGGCCGGT GGTGGTCGTG
CTCGAAGCCG ACACGCTCGA CGACGCGATC GCGCTCGTCA ACGCGAACCC GATGGGCAAT
GGCGTCGGCC TGTTCACGCA GAGCGGCGCG GCCGCGCGCA AGTTCCAGAG CGAGATCGAC
GTCGGCCAGG TCGGCATCAA CATTCCGATC CCGGTGCCGG TGCCCTACTT CAGCTTCACC
GGCTCGCGCG GCTCGAAGCT CGGCGATCTC GGCCCGTACG GCAAGCAGGT CGTGCAGTTC
TACACGCAGA CGAAGACGGT CACCGCGCGC TGGTTCGACG ACGACGCGAC GGCCGGTGGC
GTGAACACGA CCATCGCGCT GCGCTGA
|
|---|
| Protein sequence | MNAAVPQTTL ALPTAKLLID GAFVDSQSAE WGDIVNPATQ EVIGRVPYAT LDEVDAAIAS
AQRAFQTWKT TPIGARLRIM LKFQDLVRRN LERIAHTLTA EQGKTLPDAQ GDIFRGLEVV
EHACSIGTLQ QGEFAENVAG GVDTYTLRQP IGVCAGITPF NFPAMIPLWM FPMAIVCGNT
FVLKPSEQDP LSTMQLVELA IEAGVPQGVL NVVHGGKTVV DRLCTHRDIK AISFVGSTRV
GTHVYNLGSQ HGKRVQSMMG AKNHAVVLPD AHREQAINAL VGAGFGAAGQ RCMATSVVVL
VGRARDWLPD LVEKAKALKV NAGAEAGTDV GPVVSKAAKA RVLSLIDAGV KEGATLLLDG
RDVKVPGYEQ GNFVGPTIFS GVTTDMSIYQ EEIFGPVVVV LEADTLDDAI ALVNANPMGN
GVGLFTQSGA AARKFQSEID VGQVGINIPI PVPVPYFSFT GSRGSKLGDL GPYGKQVVQF
YTQTKTVTAR WFDDDATAGG VNTTIALR
|
|---|
| |