| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_3414 |
|---|
| Symbol | |
|---|
| ID | 4312274 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008391 |
|---|
| Strand | - |
|---|
| Start bp | 208792 |
|---|
| End bp | 209784 |
|---|
| Gene Length | 993 bp |
|---|
| Protein Length | 330 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 638151256 |
|---|
| Product | aliphatic sulfonate ABC transporter periplasmic ligand-binding protein |
|---|
| Protein accession | YP_775302 |
|---|
| Protein GI | 115358164 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0715] ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components |
|---|
| TIGRFAM ID | [TIGR01728] ABC transporter, substrate-binding protein, aliphatic sulfonates family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.361362 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGACA CACCGCACGC AGAACTTGAA ACTGCCCCGG CCAATCCGCG CCGCCGCCAC
TGGCTGCACG GCGCGGCCGC CGGGCTGGCC GGACTGGCGC TCGGCCCGCT CGCGGGCCTG
CCCGCACGGG CCCAGGGCAG CGACAAGCGG CTGCGCATCG GCTTCCAGAA ATACGGCAAC
TTCGTCGTGC TCAAGGCGCG CGGCACGCTC GAGAAACGGC TCGCGAGCCA GGGCGTGGCG
GTGCAGTGGC TCGAATTCCC GGCCGGCCCG CAATTGCTCG AGGGGCTGAA CGCCGGCGCG
ATCGACGTCG GCACCGTCGG CGAGACGCCG CCGATCTTCG CGCAGGCCGC CGGGGTCGAT
TTCGTCTATA TCGGCAACGA ACCGCCCGCG CCGCACGGCG AGGCGATCGT CGTGCTGCCC
GATTCCCCGA TCCGCGGCGT CGCGCAGCTG CGCGGCAAGA AGGTCGCGTT CAACAAGGGT
TCGAACGTCC ACTACCTGCT CGTGAAGGCG CTCGAACACG CGGGCCTCAC GTATGCCGAC
ATCCAGCCGG TCTATCTGAC GCCCGCCGAT GCCCGCGCCG CGTTCGTGCA GCGCAGCGTC
GACGCGTGGG TGATCTGGGA TCCGTATCTG GCGGCCGCTG AGCGGCAGCT CGGCGCGCGC
GTGGTCGCGA ACGGCGACGG GCTCGTGCGC AACACGCAGT ACTACCTCGC CGCGCGCAAG
TATGCGGCCG CGCAACCGCA GGTGCTGCGC ACGCTGCTCG ACGAAGTCGA CGCGGTCGAC
CGCTGGGGAC GCGACAATGT TCCGGAAGTC GCCGCGCAAT TGTCGCCGCT CGTCGGCCTC
GACGCGCCGA CGCTCGAAAT CGCGCTCAAG CGGGCCGGCT ACGGCGTGCA GCCCATCACC
GATGCGACGC TCGCGTATCA GCAGAAGATC GCCGATGCGT TCAGCACGCT GAAGCTGATT
CCCGGCAAGG TGACGGTCGC CAACGCGCGC TGA
|
|---|
| Protein sequence | MNDTPHAELE TAPANPRRRH WLHGAAAGLA GLALGPLAGL PARAQGSDKR LRIGFQKYGN
FVVLKARGTL EKRLASQGVA VQWLEFPAGP QLLEGLNAGA IDVGTVGETP PIFAQAAGVD
FVYIGNEPPA PHGEAIVVLP DSPIRGVAQL RGKKVAFNKG SNVHYLLVKA LEHAGLTYAD
IQPVYLTPAD ARAAFVQRSV DAWVIWDPYL AAAERQLGAR VVANGDGLVR NTQYYLAARK
YAAAQPQVLR TLLDEVDAVD RWGRDNVPEV AAQLSPLVGL DAPTLEIALK RAGYGVQPIT
DATLAYQQKI ADAFSTLKLI PGKVTVANAR
|
|---|
| |