| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_3400 |
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| Symbol | |
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| ID | 4312260 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008391 |
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| Strand | + |
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| Start bp | 197799 |
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| End bp | 198587 |
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| Gene Length | 789 bp |
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| Protein Length | 262 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 638151242 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_775288 |
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| Protein GI | 115358150 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.738354 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.358288 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGAAGT TGCTTGAAGA CAGGATCGTC GTCGTGACGG GCGGATCGCG CGGGATCGGC
CGCGCGATCG CGCTGGCGTC TGCGCGGCAT GGCGCCGACA TCGTGATCAA CTACTGGACG
AACCCGCTGC TGCCCGCGCA GGCCGATCAC GAGATCGACG CGCTCGTCGA CGCGATCCGC
GCGACGGGGC GCGACGCGCT CGCCGTGTCG GGCGACATCG CGCAGCCGGA CACGGCGCAC
GCACTGGTCG CGGCGGCGGT GGAACGATTC GGCCGGATCG ACGTGCTGGC GAGCAACGCC
GGAATCTGTC CGTTCCACGG ATTCCTGGAC TTGCCGCCCG ATCTGCTGCA AAGAACGATG
GAAGTGAACC TGCACGGCAC GTTCTACATG ACGCAGGCCG CCGCACGACA AATGGCCGCG
CAAGGGCACG GCGGTGCGAT CGTCGCGACC AGCTCGATCA GCGCGCTGGT CGGCGGCGGC
ATGCAGACGC ACTACACGCC GACCAAGGCC GGCGTCCATG CGCTGATGCA ATCGTGCGCG
GTCGCGCTCG CTCCGCATCG GATCCGCTGC AATTCGGTGC TGCCGGGCAC GATCCGGACC
GAGATCAACG ACAGCGATCT CGCGGCGCCC GGCAAGACCG AGTATTTCGA GCGCCGGATT
CCGCTCGGTC GCCTGGGCGA GCCTGACGAC GTCGCCGACT GTGTCGTGTT TCTCGCGTCC
GACATGGCGC GCTACGTGAA TGGCGCCGCG CTGCTCGTCG ACGGCGGCAT GTACGTGAAC
CTGCAGTGA
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| Protein sequence | MTKLLEDRIV VVTGGSRGIG RAIALASARH GADIVINYWT NPLLPAQADH EIDALVDAIR
ATGRDALAVS GDIAQPDTAH ALVAAAVERF GRIDVLASNA GICPFHGFLD LPPDLLQRTM
EVNLHGTFYM TQAAARQMAA QGHGGAIVAT SSISALVGGG MQTHYTPTKA GVHALMQSCA
VALAPHRIRC NSVLPGTIRT EINDSDLAAP GKTEYFERRI PLGRLGEPDD VADCVVFLAS
DMARYVNGAA LLVDGGMYVN LQ
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