| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_3394 |
|---|
| Symbol | |
|---|
| ID | 4312254 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008391 |
|---|
| Strand | + |
|---|
| Start bp | 191596 |
|---|
| End bp | 192840 |
|---|
| Gene Length | 1245 bp |
|---|
| Protein Length | 414 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 638151236 |
|---|
| Product | FAD dependent oxidoreductase |
|---|
| Protein accession | YP_775282 |
|---|
| Protein GI | 115358144 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.361362 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGACGA TCGTGCTCGG CGGCGGCATC GTCGGCGTGA CAACCGCGTA TTTTCTCGCG
AAGGCGGGCG ACGAGGTGAC GGTGATCGAA CGTCGCGGCG GCGTCGCGCT CGAGACGAGC
TTCGCGAACG CGGGGTTGAT CGCCCCCGGT CATTCGTACA CGTGGGCGTC GCCGCGCGCG
CCGAAGATTC TCTTCAAGTC GCTGTTTGCC GACGGCCAGG CGCTGCGGCT CAAATGGACG
CCCGACTGGC GAATGTGGGC ATGGTGCGGG CTGTTCCTGC AGAACTGCAC GGCCGAGCGC
TCGCGACGAA ACACGTCGAT CAAGGTGCGG CTGTGTCGTT ATTCGCAGCA GCGGCTTCAG
CAGGCGACGC ACGACGAACT GCTCGAGTAC GACCGGACGA GTGGAGGACT GTTGTACCTG
TATCGGGATC CGGCGTCGTT CGACCGCGGC GTCGCGAACA TGCGGATTCT GACCGACAAC
GGTCTGCCGC TCGATATCCT GGACGCGCGG GCCACCGTCG AACGCGAGCC CGCGCTGCGC
CATGCGGCGG GCGGGATCGC GGGTGCGATT CATTGCCCGA CCGACGAGAG CGGCGACGCG
CATCTCTTCA CGCGCGCACT CGCCGAGCGC TGCCGTGCGC TCGGTGTCGA ATTCCGCTTC
GACACGTCGA TCGACGGCGT GCGCGCAAGC GCCGATGCGA TCGACTACGT CGAGACGTCG
CACGGCCGCG TGACCGGCGA TAGATACGTG CTCGCGCTCG GCTCGTATTC GCCGATCGTC
GCTCGCGCGC TCGGTTACCG GTTGCCGATC TATCCGGTCA AGGGGTACTC GGTCACGCTG
CCGATCCACG ACACGCACGA GCCGCCCGCG CTCGGTGGCG TCGAAGAGAA CCAATTGGTT
GCATGGGCCC GCTTCGGCGA CCGGCTGCGC CTGACCGCGA CGGCCGAGTT CAGCGGCTAC
GACACCACGC ATTCGCCGGG CGATTTCGCG CACATGCTGG CGACCGCACA GGCACTGTTC
CCGAACGGCG CCGACTACTC GACACCGTCG TACTGGGCCG GGCTGCGGCC GATGACGCCG
GAGGGCACGC CGATCATCGG CGCATCCCGG CACCGCAACC TGTTTTTCAA CACCGGCCAC
GGCCATATGG GCTGGACCAT GTCGTGCGGC ACCGCGCAGA TCGTGGCGGA TCTGATCCAC
GGCAAGCGGC CCGATATCGA CATCACCGGG ATGACACTGC AATGA
|
|---|
| Protein sequence | MKTIVLGGGI VGVTTAYFLA KAGDEVTVIE RRGGVALETS FANAGLIAPG HSYTWASPRA
PKILFKSLFA DGQALRLKWT PDWRMWAWCG LFLQNCTAER SRRNTSIKVR LCRYSQQRLQ
QATHDELLEY DRTSGGLLYL YRDPASFDRG VANMRILTDN GLPLDILDAR ATVEREPALR
HAAGGIAGAI HCPTDESGDA HLFTRALAER CRALGVEFRF DTSIDGVRAS ADAIDYVETS
HGRVTGDRYV LALGSYSPIV ARALGYRLPI YPVKGYSVTL PIHDTHEPPA LGGVEENQLV
AWARFGDRLR LTATAEFSGY DTTHSPGDFA HMLATAQALF PNGADYSTPS YWAGLRPMTP
EGTPIIGASR HRNLFFNTGH GHMGWTMSCG TAQIVADLIH GKRPDIDITG MTLQ
|
|---|
| |