| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_3382 |
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| Symbol | |
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| ID | 4312242 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008391 |
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| Strand | + |
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| Start bp | 179357 |
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| End bp | 181282 |
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| Gene Length | 1926 bp |
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| Protein Length | 641 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 638151223 |
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| Product | selenocysteine-specific translation elongation factor |
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| Protein accession | YP_775270 |
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| Protein GI | 115358132 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG3276] Selenocysteine-specific translation elongation factor |
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| TIGRFAM ID | [TIGR00475] selenocysteine-specific elongation factor SelB
[TIGR00485] translation elongation factor TU |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCGTCG GGACTGCAGG ACATATCGAT CACGGCAAGA CGACGCTCGT GCGGGCGCTG
ACGGGCGTCG ACACCGACCG CTTGAAGGAA GAGAAGGCGC GCGGCATCTC GATCGAGCTC
GGCTATGCGT ATACGCCGCT CGAGAACGGC GACGTGCTCG GCCTGATCGA CGTGCCCGGC
CACGAGAAGC TGGTTCATAC GATGGCGGCC GGTGCTTGCG GAATCGACTT CGCGCTGCTC
GTGATCGCCG CCGACGACGG CGTGATGCCG CAGACCCGCG AGCATCTCGC GATCCTGCAA
CTGCTCGGTG TGACGCATGG CGCGGTCGCG CTGACGAAGT GCGATCGCGT CGACCCCGCG
CGCGTGGCGG CGGTGCGCGA CGAGATCACC GCGTGGCTGC ACGGCTCGAC GCTCGATGGC
GCGCCGCTCT TCGAAACCTG CGCGACGCGC GACGACGATC CGGGCGTCGC CGCATTGAAG
CGTTTCCTCG CGGATGCGGC GCTCGCATGG CGCGCGCGCC GCGACGACGG CCTGTTCCGG
CTCGCGGTCG ATCGCGTGTT TACGCTCGCC GGGCAGGGCA CCGTCGTGAC GGGCACCGCG
TTCGCGGGCC GCGTCGCGAC CGGCGGCACG CTCGCGGTCG TGCGCACCGG CGGCGCGGCG
CGCGTGCGCA GCATCCATGC GCAGAACCGA CCGGTCGACG CGGGCCGCGC GGGCGAGCGC
TGCGCGCTGA ACCTGGCAGG CGTCGACAAG GCGGACGTCG AACGTGGCGA TACCGTCGCG
GATGCACGGC TCGTCGCGAC GTCGCCGCGG CTTGACGTCG AACTGACGCT GCTGGCCGAC
GCGGGGCTCA CGCTGACGCA CTGGGCGCCG CTGCACGTGC ATCTCGGCAC GCTGCATCGC
GTCGCGCATG TCGCGCTGCT CGACGGCGAT ACGCTCGCGG CCGGCCAGAA GATGCGCGTG
CAACTGGTGT TCGACGAACC CGTGTTCGCG CTGCCGAGCG ATCACTTCAT CGTTCGCAAT
CCGCAAGCGA CGCGCACCGT CGGCGGCGGC CGCGTGCTCG ACCCGTTCGG TCCCGCGCGC
AAGCGCCGCA CGCCTGCGCG CCGCGCATGG CTCGACGCAC TGGCGGCGTG GCTCGACGAA
GGGCGGCTCG ATGCGCTGCT CGCGCAGGCG CCGCTCGGTA TCGCCCGAAC GATGCTCACG
CACCTCACCG GGTTTGCGCC CGACGTGCTC GCGTTGCCGG ACGACGCGCT CGCGATCGGC
CAGCGCGACG CCGCGTCGAA CGACGGCACG GTGATGGCGC GGGCGCACTG GCTGGCGCTG
CAGGCGCGCA CGATCGACAC GTTGCGCGCG TATCACGAGC GCGTGCCGGA CGAGCAGGGG
CTCGACGCGG CACGTCTGCG GCGGATGGTG GCGCCGCTCG TCGGCGATGC GCTGTGGCGT
GCGCTCGTCG ATGCGCTGGT GGACGGCGGG GAGGTCGCGC GTAGCGGGCC CTGGCTGCAT
CTGCCGTCGC ATTCGGTGAG TTTCGATGCG CGCGAGGAAG CGCTGGCGCG GCAACTGCTG
CCGCTGATCC ACGCCGGGCG CTTCGATCCG CCGTGGGTGC GCGATCTGGC GCGCGACACG
GGCACGGCGG AGGAGGCCGT GCGGTCGCTG CTGCGCAAGC TCGCGCGGCG CGGCGACGTG
CAGCAGGTCG TGCGTGACCT GTTCTATCAC GCGGATATCG TGCGCGAGCT GGCCGGGCTC
GTTGCGGATC TCGCGCCGAC GCGCGGCGGC GGGCTCGATG CGGCGACGTT TCGCGATGCG
ACGGGGCTTG GCCGCAAGCG TGCGATCCAG ATTCTCGAGT TCTTCGATCG GGTTGGGTAT
ACTCGCTTCC ACCGCGATCT CCACTTCCTG CGGCCTGACA GCGGTTGGGC GAGTATTCAG
GCGTAA
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| Protein sequence | MIVGTAGHID HGKTTLVRAL TGVDTDRLKE EKARGISIEL GYAYTPLENG DVLGLIDVPG
HEKLVHTMAA GACGIDFALL VIAADDGVMP QTREHLAILQ LLGVTHGAVA LTKCDRVDPA
RVAAVRDEIT AWLHGSTLDG APLFETCATR DDDPGVAALK RFLADAALAW RARRDDGLFR
LAVDRVFTLA GQGTVVTGTA FAGRVATGGT LAVVRTGGAA RVRSIHAQNR PVDAGRAGER
CALNLAGVDK ADVERGDTVA DARLVATSPR LDVELTLLAD AGLTLTHWAP LHVHLGTLHR
VAHVALLDGD TLAAGQKMRV QLVFDEPVFA LPSDHFIVRN PQATRTVGGG RVLDPFGPAR
KRRTPARRAW LDALAAWLDE GRLDALLAQA PLGIARTMLT HLTGFAPDVL ALPDDALAIG
QRDAASNDGT VMARAHWLAL QARTIDTLRA YHERVPDEQG LDAARLRRMV APLVGDALWR
ALVDALVDGG EVARSGPWLH LPSHSVSFDA REEALARQLL PLIHAGRFDP PWVRDLARDT
GTAEEAVRSL LRKLARRGDV QQVVRDLFYH ADIVRELAGL VADLAPTRGG GLDAATFRDA
TGLGRKRAIQ ILEFFDRVGY TRFHRDLHFL RPDSGWASIQ A
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