Gene Bamb_3308 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_3308 
Symbol 
ID4312310 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008391 
Strand
Start bp99695 
End bp100699 
Gene Length1005 bp 
Protein Length334 aa 
Translation table11 
GC content72% 
IMG OID638151150 
ProductHpcH/HpaI aldolase 
Protein accessionYP_775197 
Protein GI115358059 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2301] Citrate lyase beta subunit 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.747689 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCGCGC TCACTCCTGC ACAAGTGCTG TACGACGGGG CGTCGCCGCC CGCGATCCTG 
CCCTGCTGCG ATCACTACGC GGGCAGCGAG AAGCTGATGC GCAAGTCGCT CGCGCTCCAG
GCCGAACTCG GCCCCGTGTT CGACATCACG CTCGACTGCG AGGACGGCGC GGCCGTCGGC
CAGGAAGCCG CGCACGCGCA GCTCGTCGCC GAGCTGCTCG GCAGCGCCGA GAACCGCTTC
GGGCGGGTCG GCGTCCGCAT CCACGACTTT TCCCATCCCC ATTGGCGCGA CGACGTGCGC
ATCGTGCTGC GCGCCGCGCG CGCACCGGCC TACGTCACGC TGCCGAAGAT CGCGAGCGCC
GCCGACGCGG CCGAGATGGT CGCGTTCATC GAAGGCACAC GCCGCGAGCT CGGCCTCGCG
CAGCCGATTC CCGTCGACGT GCTGGTCGAG ACGCACGGTG CGCTCGCGCA GGCGGCCGCC
CTCGCCGCGC TGCCGCTCGT CGGCACGCTG AGCTTCGGGC TGATGGACTT CGTGTCCGCC
CATCACGGCG CGATTCCCGA TGCGGCGATG CGCTCGCCCG GCCAGTTCGA CCACCCGCTC
GTGCGCCGCG CGAAGCTGGA GATCGCCGCG GCCTGCCACG CGCACGGCAA GACACCGTCA
CACAATGTCA CAACCGAGGT GCGCGACATG GCGATCGTCG CCGGCGACGC CCTCCGCGCA
CGCGACGAAT TCGCATTCAC GCGGATGTGG AGCATCCATC CCGCGCAGAT CCGCCCGATC
GTCGACGCAT TCGCGCCGCG CACCGATGAA GTCGCACTGG CCGCCGAGAT CCTGCTGGCC
GCGCAGGCCG CCGACTGGGG CCCGACGCGC CACGGCGATA CGCTGCACGA CCGCGCGAGC
TACCGCTATT ACTGGTCGGT GCTGCGCCGC GCGCGCGCGA CCGGCCAGCC GGTGCCGGCC
GAGGCCGCAC CGCTGTTCGG CCCAGCCGCC GGAGACGCGC GGTGA
 
Protein sequence
MSALTPAQVL YDGASPPAIL PCCDHYAGSE KLMRKSLALQ AELGPVFDIT LDCEDGAAVG 
QEAAHAQLVA ELLGSAENRF GRVGVRIHDF SHPHWRDDVR IVLRAARAPA YVTLPKIASA
ADAAEMVAFI EGTRRELGLA QPIPVDVLVE THGALAQAAA LAALPLVGTL SFGLMDFVSA
HHGAIPDAAM RSPGQFDHPL VRRAKLEIAA ACHAHGKTPS HNVTTEVRDM AIVAGDALRA
RDEFAFTRMW SIHPAQIRPI VDAFAPRTDE VALAAEILLA AQAADWGPTR HGDTLHDRAS
YRYYWSVLRR ARATGQPVPA EAAPLFGPAA GDAR