| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_3306 |
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| Symbol | prpD |
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| ID | 4312308 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008391 |
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| Strand | - |
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| Start bp | 97479 |
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| End bp | 98930 |
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| Gene Length | 1452 bp |
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| Protein Length | 483 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 638151148 |
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| Product | 2-methylcitrate dehydratase |
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| Protein accession | YP_775195 |
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| Protein GI | 115358057 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2079] Uncharacterized protein involved in propionate catabolism |
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| TIGRFAM ID | [TIGR02330] 2-methylcitrate dehydratase |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.494444 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGCCC CGGTCTCCAA CGTCCGCCCT GCTCCGGATA CGGTACTCGT CGATATCGTC
GACTACGTGC TGAACACCGG CATCGACAGC GCGCTCGCGC TGGAGACGGC GCGTCATTGC
CTGATCGACA CGCTCGGATG CGGACTCGAG GCGCTGTCCT ATCCCGCCTG CACCAAGCTG
CTCGGCCCCG TCGTGCCCGG CACGATCGTG CCGAACGGCG CGAAGGTGCC CGGCACGTCC
TTCCAGCTCG ATCCCGTCCA GGCCGCGTTC GACATCGGCG CGATGATCCG CTGGCTGGAC
TTCAACGACA CCTGGCTCGC CGCCGAATGG GGTCATCCGT CCGACAATCT GGGCGGGATC
CTGGCGACGG CCGACTGGCT GTCCCGCACG GCCGTCGCGG CCGGCAGGCA GCCGCTTGCG
ATGCGCGACG TGCTCGTCGC GATGATCCAG GCCCATGAGA TCCAGGGCTG CCTCGCCCTC
GAGAATTCGT TCAACGCCGT GGGGCTCGAC CACGTGCTGC TCGTGAAGGT CGCGTCGACG
GCCGTCGTCG GCCGCCTGCT CGGGCTTACG CGCGACGAGC TGATCAACGC GGTGTCCAAC
GCATTCGTCG ACGGTCAGGC GCTGCGCACC TACCGCCACG CGCCGAACAC CGGTTCGCGC
AAGTCATGGG CGGCCGGCGA CGCGACGTCC CGCGCGGTGC GCCTCGCGCT GATCGCGAAA
ACGGGTGAAA TGGGCTACCC GTCGGCGCTC ACCGCAAAAA CGTGGGGCTT CTACGACGTG
CTGTTCGACG GGCAGCCGTT CCGCTTCCAG CGCCCGTACG GCACGTACGT GATGGAAAAC
GTGCTGTTCA AGATCGCGTT CCCGGCCGAA TTCCACGCGC AGACGGCCGC CGAGGCCGCG
CTGCAGTTGC ACGCGCAGCT CGCCGCGGCG GGCCGCACGA CCGACGACAT CAGCCGGATC
ACGATCCGCA CGCACGCGGC CGCGCTGCGC ATCATCGACA AGCAGGGCCC GCTCGCCAAT
CCGGCCGATC GCGATCACTG CATTCAGTAC ATGGTCGCCG TGCCGTTGCT GTTTGGCCGG
CTGACCGCCG CCGATTACGA AGACGCGGTC GCCGCCGATC CGCGCATCGA CGCGCTGCGC
GCGAAAACCG TGTGCGTCGA GGATCCGCAG TTCACGAAGG ATTACCATGA CCCGGCCAGG
CGATCGATCG CGAATGCGCT GACGATCGAA TTCGCGGACG GGTCGAAGCT TGCCGAAGTG
GCGATCGAAT ACCCGCTCGG CCACCGGCGC CGCCGCGCGG AAGGCATCCC GCTGCTGGTC
GAGAAGTTCA GGACCAACCT CGCCCGTCGC TTCCCGGCCA GGCAGCAACA AGCGATTCTC
GACGTGTCGC TGGACCAGGC AACGCTCGAA GCAATGCCGG TCGATGAATA CGTCGACTTG
TATGTGATAT AG
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| Protein sequence | MSAPVSNVRP APDTVLVDIV DYVLNTGIDS ALALETARHC LIDTLGCGLE ALSYPACTKL
LGPVVPGTIV PNGAKVPGTS FQLDPVQAAF DIGAMIRWLD FNDTWLAAEW GHPSDNLGGI
LATADWLSRT AVAAGRQPLA MRDVLVAMIQ AHEIQGCLAL ENSFNAVGLD HVLLVKVAST
AVVGRLLGLT RDELINAVSN AFVDGQALRT YRHAPNTGSR KSWAAGDATS RAVRLALIAK
TGEMGYPSAL TAKTWGFYDV LFDGQPFRFQ RPYGTYVMEN VLFKIAFPAE FHAQTAAEAA
LQLHAQLAAA GRTTDDISRI TIRTHAAALR IIDKQGPLAN PADRDHCIQY MVAVPLLFGR
LTAADYEDAV AADPRIDALR AKTVCVEDPQ FTKDYHDPAR RSIANALTIE FADGSKLAEV
AIEYPLGHRR RRAEGIPLLV EKFRTNLARR FPARQQQAIL DVSLDQATLE AMPVDEYVDL
YVI
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