Gene Bamb_3300 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_3300 
Symbol 
ID4312302 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008391 
Strand
Start bp89371 
End bp90864 
Gene Length1494 bp 
Protein Length497 aa 
Translation table11 
GC content72% 
IMG OID638151142 
Productmajor facilitator transporter 
Protein accessionYP_775189 
Protein GI115358051 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID[TIGR00711] drug resistance transporter, EmrB/QacA subfamily 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.471538 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAACCGGT TTCACCGCAT GGCATGCGCC GCCGCGCCGC TCAATTCCGC GACGCCGCGC 
GTCGCTCGTC AGCCGAGCCT CATCTTGTCC GAATTCGCTT CCTCCGCCGG CGCCCGGGAG
CCGGCCGTCA ACTGGCGCGC GATGTCCGCC GTGCTGCTGG CCGTCGCGCT CGCGACGCTC
GACACCGCGA TCGCGAACAC CGCGCTGCCC GCGATCGCCG CCGACCTGCA TGCGTCGCCG
GCCGCATCGG TGTGGATCAT CAACGCCTAC CAGCTCGCGA TGGTCGCGAC GCTGCTGCCG
TTCGCGTCGC TCGGCGACAT CGTCGGCCAC AAGCGCGTGT ATGTCGCGGG CCTCGCGGTG
TTTACGCTCG CGTCGCTCGG CTGCTCGCTC GCGTCGACGC TGCCGCAGCT GACGGCGGCG
CGGATCGTGC AGGGCTTCGG CGCGAGCGCG ATCATGAGCG TGAACGTCGC GCTGATCCGC
AACCTGTTTC CCGCGCACCG GCTCGGGCGC GGCGTCGGCT TCAACGCGCT CGTCGTCGGC
GTGTCGTTCG CGGTGGGGCC GACGATCGCG TCGTTGATCC TGTCGGTGGC CGCCTGGCCG
TGGCTGTTCG CGGTGAACGT GCCGCTCGGC GTGCTCGCGC TTGCCGTCGC GATTCCGTCG
CTGCCGCAGT CGGCGCGCGG CAAGCATGTG TTCGATCCGC TCGCCGCGCT GTTCAATGTG
ATCACGTTCG CGTCGCTGAT CTTCGCGCTC GGCGAATTCG CGCAGCGCGG GCCGCTGTCC
GTCGTGCTCG CGGCGGCCGC GGTCGCGCTC ACGTTCGGCT GGCTGCTAAT CCGCCGCCAG
GCCGGACACC CGGCGCCGAT GCTGCCGGTC GACCTGTTCC GCCGGCCGGT GTTCACGCTG
TCCGCGCTGA CGGCCGTATG CGCGTTTGCC GCGCAGGGGC TTGCGTTCGT ATCGCTGCCG
TTCTACTTCG AAACCGTCCT GCATCGCAGC GCGGTGGAGA CCGGCTTCCT GATGACACCG
TGGTCGGCGG TCGTCGCGCT CGCCGCGCCG ATCGCGGGCC GGCTGTCCGA CCGTTATCCG
CCCGGCTTGC TCGGCGCGAT CGGCCTCGCC TTGCTGAGCG CGGGGATGGT CGCGCTCGCC
GCGCTGCCGG CCGCGCCGAA CGTCTTCGAC ATCGGCTGGC GGATGATGCT GTGCGGCGCG
GGCTTCGGCT TCTTCCAGTC GCCGAACCTG AAGGCGCTGA TGTCCAGCGC GCCGCCCGAG
CGCAGTGGCG GCGCGAGCGG GATCATCGCG ACCGCGCGGC TGATCGGGCA GGCGACCGGC
GCGGCGCTCG TCGCGCTGTC GTTCGGCGTC GCCGGACGTC ACGGGCCGAC GCTCGCGCTG
ATGCTCGGTG CAGGCTTTGC CGGCGCCGCG AGCGTCGCGA GCGGATTGCG GCTCTTCGCG
CCGTCGCATC GCGTCGGCGC GCCGGTGCCG GTGAAGGAGC GGGCGACGGA GTAG
 
Protein sequence
MNRFHRMACA AAPLNSATPR VARQPSLILS EFASSAGARE PAVNWRAMSA VLLAVALATL 
DTAIANTALP AIAADLHASP AASVWIINAY QLAMVATLLP FASLGDIVGH KRVYVAGLAV
FTLASLGCSL ASTLPQLTAA RIVQGFGASA IMSVNVALIR NLFPAHRLGR GVGFNALVVG
VSFAVGPTIA SLILSVAAWP WLFAVNVPLG VLALAVAIPS LPQSARGKHV FDPLAALFNV
ITFASLIFAL GEFAQRGPLS VVLAAAAVAL TFGWLLIRRQ AGHPAPMLPV DLFRRPVFTL
SALTAVCAFA AQGLAFVSLP FYFETVLHRS AVETGFLMTP WSAVVALAAP IAGRLSDRYP
PGLLGAIGLA LLSAGMVALA ALPAAPNVFD IGWRMMLCGA GFGFFQSPNL KALMSSAPPE
RSGGASGIIA TARLIGQATG AALVALSFGV AGRHGPTLAL MLGAGFAGAA SVASGLRLFA
PSHRVGAPVP VKERATE