Gene Bamb_3292 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_3292 
Symbol 
ID4312151 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008391 
Strand
Start bp78621 
End bp80750 
Gene Length2130 bp 
Protein Length709 aa 
Translation table11 
GC content69% 
IMG OID638151134 
ProductTonB-dependent copper receptor 
Protein accessionYP_775181 
Protein GI115358043 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG1629] Outer membrane receptor proteins, mostly Fe transport 
TIGRFAM ID[TIGR01778] TonB-dependent copper receptor 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.49865 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCATTC CTTCCTTGCG CGCGCCGAGG GCGTCGCGCC ATTGCCGCGC GCGATGCGTG 
CCGCGCATGC TGAAACTCAC CATTCCCGCG CTGGCCGTCG GCGCGATGAG CGCGGCGGCC
GCCGCTGAAG CCGCGCGCGC GGCCGGTGCG CCGACGGACG ACGCGGCCGT ACTGCTGCCC
CCCGTCGAAG TCGTCGCGTC GCCGCTGACG ACACCGCTCG TCATCGTCAC GGATCCGAAG
ACGCCGCGCC AGCCGCTGCC GGCCAGCGAC GGCGCCGACT ACCTGAAGAC GATTCCCGGT
TTCACGTCGA TCCGCAGCGG CGGGACGAAC GGCGACCCCG TGCTGCGCGG GATGTTCGGT
TCGCGGCTGA ACATTCTGGC GAACGGGATG CCGACGCTCG GTGCGTGTCC GAACCGGATG
GACGCGCCGA CTTCGTATAT CGCGCCGGAA AGCTATGACA AGGTCACGGT CGTGAAGGGG
CCGCAGACCG TGCTGTACGG CCCCGGCGCA TCGGCCGGCA CCGTGCTGTT CGAACGCGTG
ACGCCGCGTT TCGAGCGCCC CGGCATGCGC TTCGACGGCA GCGTGGTCGG CGGCTCGTTC
GGCCGCAACG ACCAGAACGT CGACGTGACG GCCGGCACGC CGGACGTCTA TGGCCGCGTG
AGCGCGAACC ACGCGCACGC GCAGGATTAC CAGGACGGCA ACGGCAACAC CGTGCCGTCG
CAATGGGACA AATGGAACGC GGATGCGGCG CTCGGCTGGA CGCCCGACGA TCACACGCGC
GTCGAACTGA CGGCCGGCAC CGGTGACGGT TATGCGCGCT ATGCGGGGCG CGGGATGGAC
GGCGCGCATT TCCGCCGCGA GACGTTCGGC CTGTCGTTCG ACAAGCGGCA TCTCGGCGAC
GTGCTCGAGC GCATCGAGGC GCGCGTGTAC TACAACGAAG CCGACCATGT GATGGACAAC
ACCACGCTGC GGCAGCCCGA TCCGACCAGC AGCATGCCGA TGCGGATGGC ATCCGAAGTG
CGGCGCCGCA CGCTCGGCGC GCGGGCGGCG GCGACGTTTC GTTTCGGCGA CGACTTCAAG
CTTGTCACCG GCGTCGACGC GCAGTCGAAC CGGCTCGACG CGCGCTCGGC GATGGGGCGG
CAGAACTACG GCGACCAGCC GTGGGATGCG CAGGCGACGA TGTGGAATGC GGGCGCGTTC
GGCGAGCTGA CGTGGTACGC GAGCGATGCG GCGCGCGTGA TCGGCGGCGC GCGGGTCGAC
TACGCGAGCG CCCGCGACAA GCGTGCGACG ACGAGCGGGA TGATGGCGAG CAAGCCGAAT
CCCACCTTCG ACGACGATCG CGCGCGCGTG CTGCCGAGCG GCTTCGTGCG CTACGAGCGC
GATCTCGCGT CGCTGCCGGT CACGTGGTAC GCGGGAGTCG GTCATGCGGA ACGCTATCCG
GACTACTGGG AGCTGTTCTC CGCGAAGCGC GGGCCGGCCG GTTCGGTCAA CGCGTTCTCG
GCGGTGCAGC CGGAGAAGAC CACGCAGCTC GACATCGGCG CGCAGTACAA GAGCGAGCGG
GTCGATGCGT GGGTGTCGGC CTACGCAGGC TATGTGCAGG ACTACATCCT GTTCAATTAC
GCGGCCGGGA TGATGGGCCC GACCACGCAG GCGACCAACG TCAACGCGCA GATCTTCGGT
GGCGAAGCCG GCGTGTCGTG GCGGCCGGTC GCACCGCTGC GCGTCGAGAC GTCGCTTGCT
TATGCATGGG GGCGCAACGC GACGAGCGGC GATCCGTTGC CGCAGATGCC GCCGCTCGAG
GCGCGCGTTG GGCTCGAATA CACGCGCGGC GCATGGTCGG CCGGTGGCTT GTGGCGGATC
GTTGCGCCGC AGCATCGCTA TGCGCTGAAC GAGGGCAACG TGGTCGGCAA GGACTTCGGT
CCGAGCGCCG GATTCGGCGT GTTGTCGCTG CATGCGCAGT ACAACGTCAG CAAGAAGGTG
CAGATTTCGG TCGGCGTCGA CAACGTGCTG GACAAGGCGT ATGCGGAACA CCTGAACCTC
GCCGGCAATG CGGGCTTCGG CTATCCGGCG AATGCGCCGG TGATGGAGCC GGGGCGTACG
GCATGGGTGC GCGTGAGCGC GAAGCTCTGA
 
Protein sequence
MTIPSLRAPR ASRHCRARCV PRMLKLTIPA LAVGAMSAAA AAEAARAAGA PTDDAAVLLP 
PVEVVASPLT TPLVIVTDPK TPRQPLPASD GADYLKTIPG FTSIRSGGTN GDPVLRGMFG
SRLNILANGM PTLGACPNRM DAPTSYIAPE SYDKVTVVKG PQTVLYGPGA SAGTVLFERV
TPRFERPGMR FDGSVVGGSF GRNDQNVDVT AGTPDVYGRV SANHAHAQDY QDGNGNTVPS
QWDKWNADAA LGWTPDDHTR VELTAGTGDG YARYAGRGMD GAHFRRETFG LSFDKRHLGD
VLERIEARVY YNEADHVMDN TTLRQPDPTS SMPMRMASEV RRRTLGARAA ATFRFGDDFK
LVTGVDAQSN RLDARSAMGR QNYGDQPWDA QATMWNAGAF GELTWYASDA ARVIGGARVD
YASARDKRAT TSGMMASKPN PTFDDDRARV LPSGFVRYER DLASLPVTWY AGVGHAERYP
DYWELFSAKR GPAGSVNAFS AVQPEKTTQL DIGAQYKSER VDAWVSAYAG YVQDYILFNY
AAGMMGPTTQ ATNVNAQIFG GEAGVSWRPV APLRVETSLA YAWGRNATSG DPLPQMPPLE
ARVGLEYTRG AWSAGGLWRI VAPQHRYALN EGNVVGKDFG PSAGFGVLSL HAQYNVSKKV
QISVGVDNVL DKAYAEHLNL AGNAGFGYPA NAPVMEPGRT AWVRVSAKL