| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_3274 |
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| Symbol | |
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| ID | 4312133 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008391 |
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| Strand | - |
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| Start bp | 61569 |
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| End bp | 63056 |
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| Gene Length | 1488 bp |
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| Protein Length | 495 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 638151116 |
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| Product | RND efflux system outer membrane lipoprotein |
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| Protein accession | YP_775163 |
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| Protein GI | 115358025 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGCCCT TCTCCCTGCC CCGCCGCCCT GCGCTCACGC TGTGCGCAGC CGCTTGCCTG
CTCGCCGGCT GTACCGTCGG CCCCGACTAC CGCGGCGCAC CCGCGGCCCC CGACGCGCCG
ACCTTCGTGC GTGCGCCCGC CACCGGCGTC GACTCCACCG CCCCCGCGCC GAGTGCGTGG
TGGCATGCGC TCGGCGATCG CCAGCTCGAC GACCTGATCG CCGCCGCGCT CGCGCACAAC
CCCGATCTGC AAGCCGCGCA GGCCCGGTTG CGCGCGTCGC GCGCGCAGCT GTCGCAACAG
CGCGCCGCGC AGCTGCCGAA ATCGTCGGCC ACAGTCGCCG CGATCCGCGC GCGCGAACCG
GACGTCAGCG CGCTCGGCTC GATGCTGCCG TCCGGCAACT CGAACCAGTC GGGCGGTTCA
TCGCCGTCGC TGGGCGGCTC AGGCCCGCTG CAGCTCTATT CGGCCGGCTT CGACGCGACC
TGGGAAATCG ACCTGTTCGG CGGCACGCGT CGCGCGGTCG AAGCCGCGTC CGCGCAGGCG
GAAGCCGTCG ACGCCGACCT CGCCGACACG CAGGTGTCGA TCGCGGCCGA AGTGGCGACC
GCGTACGTCG ACCTGCGCGA CCAGCAGCAA CGGCTCGCGC TGTCGCAGCG CACGGCCGAA
CTGCAACAGC AGATGCTCGA ACTCACGCAG CAGCGCCGCG CGCGCGGCGT CGCGGCCGAT
GTGGACATCG AACGCCTGAC GACGCAGGTC GAAAACACGC GCGCGTCGTT GATCCCGCTC
GATGCGCAGG TGACGGAGTC GCTCGACCGG CTCGCGATCC TGACCGGACG CGCGCCCGGT
GCGCTCGATG CCGCGCTGTC GGCATCGGGC ACGCCATTGC CGACGCTACC CGGCAGCGTG
CCGGTCGGCG ATCCGGCCGC GCTGCTCAAG CAGCGCCCCG ACATCCGCGC GGCCGAGCGT
CGGCTCGCGT CGAGCAATGC GCAGGTCGGC GAGCACATCG CCGACTATTT CCCGAAGGTG
ACGCTGCTCG GCGATCTCGG CTTCAGCGCG ACGGACCCCG GCCATTTGTT CCGCAAGCAG
AACTTCACGT GGATCGGCGC ACCGTACCTG CAATGGAACA TTCTCGACTT CGGCCGCACG
CGCGGCGCGA TACGGGCGGC CGAAGCGTCG CGCGACGAAG CGGAGGCGAA TTACCAGAAA
GCGGTGCTCG GCGCATTGCA GGACGCGAAC ACGGCGCTGC AGCGCTACGG ACACCAGCGC
GAACATGTGA TCGCGCTCGC CAAGGTGCAG ACGTCGGCCA CGCATTCGGC CACGTTGATG
GACCAGCGCT ATCGCGCGGG CGTCGCATCG ACGATCGATC TGCTCGATAC GCAGCGCGAG
GCGCTCGCCG CGCAGCAGAA CGTGATCGCT GGAAAGGCCG AACTCGTCAA GGATTACGTG
TCGCTGCAGA AGAGCCTCGG GCTCGGGTGG CAGACGAACG CGGGGTGA
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| Protein sequence | MKPFSLPRRP ALTLCAAACL LAGCTVGPDY RGAPAAPDAP TFVRAPATGV DSTAPAPSAW
WHALGDRQLD DLIAAALAHN PDLQAAQARL RASRAQLSQQ RAAQLPKSSA TVAAIRAREP
DVSALGSMLP SGNSNQSGGS SPSLGGSGPL QLYSAGFDAT WEIDLFGGTR RAVEAASAQA
EAVDADLADT QVSIAAEVAT AYVDLRDQQQ RLALSQRTAE LQQQMLELTQ QRRARGVAAD
VDIERLTTQV ENTRASLIPL DAQVTESLDR LAILTGRAPG ALDAALSASG TPLPTLPGSV
PVGDPAALLK QRPDIRAAER RLASSNAQVG EHIADYFPKV TLLGDLGFSA TDPGHLFRKQ
NFTWIGAPYL QWNILDFGRT RGAIRAAEAS RDEAEANYQK AVLGALQDAN TALQRYGHQR
EHVIALAKVQ TSATHSATLM DQRYRAGVAS TIDLLDTQRE ALAAQQNVIA GKAELVKDYV
SLQKSLGLGW QTNAG
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